| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002756 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0103000 | Gp0061308 | Ga0006272 |
| Sample Name | Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 251269858 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → borehole → clay soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mt. Terri, Switzerland | |||||||
| Coordinates | Lat. (o) | 47.379 | Long. (o) | 7.1648 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002279 | Metagenome | 575 | Y |
| F005365 | Metagenome / Metatranscriptome | 403 | Y |
| F082508 | Metagenome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI25321J39296_1048862 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 804 | Open in IMG/M |
| JGI25321J39296_1057186 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 727 | Open in IMG/M |
| JGI25321J39296_1090062 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 546 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI25321J39296_1048862 | JGI25321J39296_10488622 | F002279 | MAAQPVTPPRPQYDWAKLVGHSLKQNGPWATWEKLVEARRAYPEDMLLRGYAEIVRNTIVRDLLAGPKGLQAAPKLTPDFLADFDRFNLTAQEGYLISLIDGRITLEMLLKLTPFDNFTTLFNMAKLEHQKAITIPS* |
| JGI25321J39296_1057186 | JGI25321J39296_10571861 | F005365 | SRLQRSLAHLFGEAEDEQDRVTIMLELIRILENKLVYLQNFAIDPTSDNRMFASLVDRFIEELSGSGSPVLTPLESTYYRAIAALYAGDRIGARQGFSAACSSEESDEANDIKYKSYVILGNLSHEEHEYEEARKLHDASLRYSTNDNVTAQALAFKALNSYALHEYDEALELFERSLELFDREAPLFNSYFYRNALLFCGAIHYDRKAYDTAGEYYDRVLREVDQSSYDYFDALGQLGR |
| JGI25321J39296_1090062 | JGI25321J39296_10900621 | F082508 | SLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSVTGRKTHEDHFGIIDRVLWPVVNEGRTERAGYIFLGSWFLEQLRHEAGAYIDWDVLRDLPPIARKLYGLL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |