| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002684 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0054874 | Ga0005277 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_B (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 30955407 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 11 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.7299 | Long. (o) | -123.5699 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005649 | Metagenome / Metatranscriptome | 394 | Y |
| F016881 | Metagenome / Metatranscriptome | 244 | Y |
| F018015 | Metagenome / Metatranscriptome | 237 | Y |
| F039110 | Metagenome / Metatranscriptome | 164 | Y |
| F046847 | Metagenome / Metatranscriptome | 150 | N |
| F073643 | Metagenome / Metatranscriptome | 120 | Y |
| F089529 | Metagenome / Metatranscriptome | 109 | N |
| F098669 | Metagenome / Metatranscriptome | 103 | N |
| F102126 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0005277J37296_1001077 | Not Available | 504 | Open in IMG/M |
| Ga0005277J37296_1008312 | Not Available | 907 | Open in IMG/M |
| Ga0005277J37296_1009381 | Not Available | 1234 | Open in IMG/M |
| Ga0005277J37296_1009592 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 546 | Open in IMG/M |
| Ga0005277J37296_1011416 | All Organisms → Viruses → Predicted Viral | 1239 | Open in IMG/M |
| Ga0005277J37296_1011813 | Not Available | 741 | Open in IMG/M |
| Ga0005277J37296_1015233 | Not Available | 896 | Open in IMG/M |
| Ga0005277J37296_1017543 | All Organisms → Viruses → Predicted Viral | 2206 | Open in IMG/M |
| Ga0005277J37296_1037889 | All Organisms → cellular organisms → Bacteria | 540 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0005277J37296_1001077 | Ga0005277J37296_10010771 | F098669 | METATRGRKQKWRLKEAEGLGRKWRIEETERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKK |
| Ga0005277J37296_1003971 | Ga0005277J37296_10039711 | F005649 | LTIECNTSLSTTCYNRLTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA |
| Ga0005277J37296_1008312 | Ga0005277J37296_10083121 | F089529 | SNPTYGIDTGSVKSAITKDGEHIYVSKGEQIPYEDGFRVCVGQERVPGEITSTYSHISQERWDAIFGNKGK* |
| Ga0005277J37296_1009381 | Ga0005277J37296_10093812 | F016881 | MAVLQDKAWYQSKTIWTSVIAGVIGVLQATGYVDQVPEVVWTLLASFGLYSVRDAVGKSGK* |
| Ga0005277J37296_1009592 | Ga0005277J37296_10095921 | F018015 | MKDRQIYEMNKKWREFRLDEKLNEENESLWTWVYKGVLGGFKKAEKKGGGSVSLDEVARGVAFLIKTEFGGGAKNDFVKSLKKYIR* |
| Ga0005277J37296_1011416 | Ga0005277J37296_10114163 | F039110 | MSKVAKKAVAKKATKHQLKALINGSHGIDGGIYTYKVGDIVTLSKKSHYDSMKELVDRFSEV* |
| Ga0005277J37296_1011813 | Ga0005277J37296_10118132 | F039110 | VSKAVSKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV* |
| Ga0005277J37296_1015233 | Ga0005277J37296_10152331 | F102126 | MGSKGKDVQLGKDAERFVNDPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLAEGQQEFYSEHY* |
| Ga0005277J37296_1017543 | Ga0005277J37296_10175431 | F046847 | VNVMPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSEDFNQDEFITDLKGVKPYLFKGADNQPKKVDATSNRASLDVNDRIKSTKTMAELRALQNEI* |
| Ga0005277J37296_1017543 | Ga0005277J37296_10175433 | F039110 | MGKVTKTAVAKKVTKPQLKAICDGSHCIDGGIYTFKTGDVITLSKKSHYESMKGLSCFNEV* |
| Ga0005277J37296_1037889 | Ga0005277J37296_10378891 | F073643 | MMIVNVKLESVETVEEFLARGNKIEKSEKVLGSKSLNLFSRYSANYRAGSGKTRMGKNGSGKARMSESYTSIKHLSAT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |