NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300002676

3300002676: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_135m_A (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300002676 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0055387 | Ga0005257
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_135m_A (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size15781823
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1
Not Available3
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042625Metagenome / Metatranscriptome158Y
F081198Metagenome / Metatranscriptome114N
F089529Metagenome / Metatranscriptome109N
F099485Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0005257J37299_101001All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales900Open in IMG/M
Ga0005257J37299_102408Not Available1362Open in IMG/M
Ga0005257J37299_106314Not Available505Open in IMG/M
Ga0005257J37299_107123All Organisms → Viruses → Predicted Viral1018Open in IMG/M
Ga0005257J37299_114431Not Available614Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0005257J37299_101001Ga0005257J37299_1010011F099485QIVHNWQHSPSEIQVARTPVKAVSKSLQQTKPSVFSVEDLMGLSWILFEERH*
Ga0005257J37299_102408Ga0005257J37299_1024081F081198EIPTDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYIIVSTVAT*
Ga0005257J37299_106314Ga0005257J37299_1063142F042625MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKLTTLEGKVSEGMCNCAPPADKPL
Ga0005257J37299_107123Ga0005257J37299_1071231F081198LDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005257J37299_114431Ga0005257J37299_1144312F089529MQKSKKPLHLESIESNPTSGIDTGSVKSAITKDGEHIYVSKGEQIPYEDGFRVCVGQERVPGEITSTYSHISQERWDAIFGNKGK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.