Sample 3300002649

Basic Information
IMG/M Taxon OID	3300002649 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056668 \| Ga0005472
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF121 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF121 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	4421872
Sequencing Scaffolds	25
Novel Protein Genes	26
Associated Families	22

Dataset Contents

Total Genome Size

4421872

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.471116

Long. (^o)

-72.17263

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001380	Metagenome / Metatranscriptome	709	Y
F003383	Metagenome / Metatranscriptome	490	Y
F018180	Metagenome / Metatranscriptome	236	Y
F018933	Metagenome / Metatranscriptome	232	N
F019794	Metagenome / Metatranscriptome	227	N
F022652	Metagenome / Metatranscriptome	213	Y
F024939	Metagenome / Metatranscriptome	203	N
F027219	Metagenome / Metatranscriptome	195	Y
F027523	Metagenome / Metatranscriptome	194	N
F027762	Metagenome / Metatranscriptome	193	Y
F029031	Metagenome / Metatranscriptome	189	Y
F030305	Metagenome / Metatranscriptome	185	N
F035644	Metagenome / Metatranscriptome	171	Y
F061605	Metagenome / Metatranscriptome	131	N
F066368	Metagenome / Metatranscriptome	126	Y
F067295	Metagenome / Metatranscriptome	125	N
F076700	Metagenome / Metatranscriptome	117	N
F088337	Metagenome / Metatranscriptome	109	N
F089618	Metagenome / Metatranscriptome	108	N
F093894	Metagenome / Metatranscriptome	106	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005472J37260_100022	Not Available	618	Open in IMG/M
Ga0005472J37260_100269	Not Available	826	Open in IMG/M
Ga0005472J37260_100343	Not Available	879	Open in IMG/M
Ga0005472J37260_100410	Not Available	821	Open in IMG/M
Ga0005472J37260_100484	Not Available	526	Open in IMG/M
Ga0005472J37260_100485	Not Available	584	Open in IMG/M
Ga0005472J37260_100629	Not Available	579	Open in IMG/M
Ga0005472J37260_100658	Not Available	897	Open in IMG/M
Ga0005472J37260_100799	Not Available	568	Open in IMG/M
Ga0005472J37260_100849	Not Available	1389	Open in IMG/M
Ga0005472J37260_101003	Not Available	590	Open in IMG/M
Ga0005472J37260_101237	Not Available	726	Open in IMG/M
Ga0005472J37260_101312	Not Available	825	Open in IMG/M
Ga0005472J37260_101505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	643	Open in IMG/M
Ga0005472J37260_102067	Not Available	584	Open in IMG/M
Ga0005472J37260_102189	Not Available	808	Open in IMG/M
Ga0005472J37260_102514	Not Available	511	Open in IMG/M
Ga0005472J37260_102913	Not Available	845	Open in IMG/M
Ga0005472J37260_103057	Not Available	564	Open in IMG/M
Ga0005472J37260_103370	Not Available	1377	Open in IMG/M
Ga0005472J37260_103689	Not Available	657	Open in IMG/M
Ga0005472J37260_103885	Not Available	573	Open in IMG/M
Ga0005472J37260_104268	Not Available	509	Open in IMG/M
Ga0005472J37260_104665	Not Available	864	Open in IMG/M
Ga0005472J37260_104951	Not Available	951	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005472J37260_100022	Ga0005472J37260_1000221	F027762	EVQRAVSLVDGSEPGTMIRKRVVIKMIDACGERRENGPETKASFSDLATD*
Ga0005472J37260_100269	Ga0005472J37260_1002691	F066368	LAARSPDATGLASSLIDCFFSQSSGAIFNIAGLRKFVHAACPAIVSFPLQALFLVRFSAFSFGELNFYFEFCRDTHTVLIRSSNQSLFWQLRFIQARNLPELLHSNRSGFSSLLTADPPFAFGARERTRGTGEFCLRCLPFGRFLEEPGQST*
Ga0005472J37260_100343	Ga0005472J37260_1003431	F003383	VAPLSRSSSSARVASPGCPVPAPFLLSRRSNPQVAPWFRAFGSAGDGRSSYPERRMPLALLVSASFRVAPEDLAFSRPACDEGLGSPLVLHLRLYRRWIIESPRCSHHSAVPTYQSSSCPKSQPFGIADDSLSELPRTLNPPAPTDGYPSHLGSRTIRFALVRSPSCPGHLPSATAIDQFPGCPKSWVSHRSSIHRASSFPESWILG*
Ga0005472J37260_100410	Ga0005472J37260_1004102	F018933	VPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPALYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT*
Ga0005472J37260_100484	Ga0005472J37260_1004841	F076700	SSLAVQPVLRPPATPVAALQLSLVLGSSGCAGTVTLTCVSALHSGSTSGQPSGSDRFRVLRLDRLQTSDSHRLFRSSARPLAIYQACARSWFHRACARQSWFHLARAAWPFLRLGRQPTSDSHRCRSLARLAASSGLRLMLPLPLVWLRVQFAPVASPYAFTGREPLGLRLVA
Ga0005472J37260_100485	Ga0005472J37260_1004851	F027762	RAESLVQGSESGTMIRERVVTKIIGACGERRKIGPGTKASFSDQAAD*
Ga0005472J37260_100629	Ga0005472J37260_1006291	F029031	GTANLVSGSDPGTLIRRQTNKTERRRGAKGHRAEHKGELLKRQTG*
Ga0005472J37260_100658	Ga0005472J37260_1006581	F030305	GVFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFRIACRAGLQS
Ga0005472J37260_100799	Ga0005472J37260_1007991	F022652	SRVHGTIDRTTRMLSVRSAAKCALSFVHCSPLLPFSLPRVNAANALFGFRTLPEPVSRCGLSLARNDAFTPFRGQCSRPAPSIPRRTPSRIRSISGSFTPFGFEADPGRYHRPTPVSRADFRRSRVFHPPPLPFGHFRTLRIKAFSEHPTREARLTELRSPFAPRCDFFRFRSGSTLPVRCVPLDYRSV
Ga0005472J37260_100849	Ga0005472J37260_1008491	F035644	MEPPTSPKELALSEYVHSDYMSESERDAEADIPVPDRLLPKQEYRRLVEALRLSQKIGLLVWLNRQGLLSLGGKERLLYLQAKASFEALEAGLRFARRLSEERKLQSDFRHQMRELNRRPQSKHFRQSEARRIGVGYRDKGMLPEQSLRARRAAWEESFLPTESIPEDLLRVLQKYLPSCLTEDGEWVDLSVFPGTFGSEGDSEMKTLLHPL*
Ga0005472J37260_101003	Ga0005472J37260_1010031	F000396	VPSDLISQPNSPPACNGTELCPQDRRVSSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCPSPGHHFEVEAPDLLLQHPAVRSSCPFRFRFPYVLQFALVRARSIPKPRCLTPVRHSQPFFGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR*
Ga0005472J37260_101237	Ga0005472J37260_1012371	F018180	MPAVFFSTSPPFRKVNEACLLSDPSRLGRLFCDAFQRLFIHRLAFSGPPLSSAPCWRTVATFYPLGNCDSLKPETVLSYLTRLGAVSFRTLSLSPFFAFTDSARTLPEELVNSASAIPPCGFPLEEPCQPAWPDFSPVTWDYPGDLCHLSFVR
Ga0005472J37260_101312	Ga0005472J37260_1013121	F067295	TVEARRPENPAESTTEIIPGDRGMEGGSWCRPPLLGGNSRKGTITSSSGRCHDRSSNMNQELRGEARTRNRGRAQSGNRDVSTRRPDAVTQRVYGCYCADQNAKANPGGRRKPNTPARRPGPAKAARARKGDVDAGSERDRQIP*
Ga0005472J37260_101505	Ga0005472J37260_1015051	F089618	LDGLVVQPVLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPPCFNRTLHRRLSRR*
Ga0005472J37260_102067	Ga0005472J37260_1020671	F027523	FQVTKVTARSPTGMLQSELGELELPSIPLSLRAAIFGPLRLNA*
Ga0005472J37260_102189	Ga0005472J37260_1021891	F093894	LGAELSVTSTGIQGQPRSNPCIALGASVEQGVIPDRGKVQKVGTGNSG
Ga0005472J37260_102514	Ga0005472J37260_1025141	F000396	AGRFSLPLPAVFFRRQRFNASGLACQLFWLEPVSRSGLSLSRNDCRFPGHHFEVKAPDLLLRHPTVRLSCPFGFRFPHALRFAPLRAGSIPQSRCLTPERHPRPFLGSPLPFGAFRTLKDQSVQPDSWPGSSPSDHSRLPFTPRHRFYFTSSIPDHRSELAKRSVACCS
Ga0005472J37260_102913	Ga0005472J37260_1029131	F024939	SRVAGPRTLRCAPVADYSSLDTWLSPLPADCSAFYFVHPMLLADLTRLSALYARCRLRIAPFPAICVRAVQRIAPCSTLRALHRSRIAPLSMLARRASCGLLRSLHFAPRRRPRIDPPRLLRSDSSSFGDLMLRDGLRIAPYADTSHPRVDHGFLRVQHFKLRTVHRLLCARRLALVSDCGLLRSPHLAPWCCPRIAPCTTLGVLRLTRLAPLSTLITPHRI*
Ga0005472J37260_103057	Ga0005472J37260_1030571	F001380	PGLTVRFSDPSACGRSLRSRSFRMIFPLLASAAFQHAMGHSSGNPRRIPLLPEPEIRNGLSLARNDAFATIARSMFLACAFTSTPKNSANPFDIRLLRSVRFRGRPGAISTPDTRCPRPTSAPSFSSRPPLPFGFF*NPPAQSVQPFRSRKTRLAGRSIETHSPPRHLSIRCGSTLETRFVPLNASFR
Ga0005472J37260_103217	Ga0005472J37260_1032171	F019794	PLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGRRPFAIPAANFRLASDVTPSSFTGFDSPDLRRMFLPPVGPLMHPLLQPNLASPAEPSMSIQSPPVLAPSGSASFNNLRLAS
Ga0005472J37260_103370	Ga0005472J37260_1033701	F035644	MGTPASSEEWGLPEYVQSDYLTESERDAEAEIPVPDRLLPKREYQRLVGMLKLGQKIGILVWLNREGLLTLGGKERLLYLQAKASYEALEAGLRFARRLSEEKKLPLDFRHQMRELNRRPQSKHFRQSDARRIGVGYRDKGILPEQSLRARRAAWEESFIPVDLVPEDLLNVLKRYLPSCLTEDGEWVDLSVFPGSFGSDGDSELTKLLHPL*
Ga0005472J37260_103689	Ga0005472J37260_1036891	F001233	LRWAAAVNRLSPKISRIIPGDWGKDESGWLVHPLINRAARSGSGGRIHQFLWRRSHAVGYAKRNCAVRGD*
Ga0005472J37260_103885	Ga0005472J37260_1038851	F061605	PSITAKLPAGMHGTELCSQIRRAFFLSAPRFLLSKAADRCFQARLRASLTGADISKRPFALPKRLPVSEPPFRGQRSRPTPSMPCRSLARPVRLSAPPRAPVRPGTREITAKNPLPDSRSALPTVSRISTPLQGLSNPSGSKRSIRFPIWKLTFRIAPDCPSLPGFGSI*
Ga0005472J37260_104268	Ga0005472J37260_1042681	F018180	SDLLSLRLPFAHMPAVFFSTSPASWQVNEACLPSDPSRTGRSFVTPFSAFFLRTAPFGTAGSPAPCWRTVATVYPLGNCDSLKPETLLSYLTRLGAVSHRPSSLSSFFAFSDSARTLPEELVNSASAILPFGCLLEELSQPAWPNFSPVTWDYPGDLRRLSFVRLHPSR
Ga0005472J37260_104665	Ga0005472J37260_1046652	F027219	MNKTNLLLSTAVGLAFVVAGSSAMAVGQKHTLPGNAKAHTAINFAKAPFKRPLHQDHGKPNHLKARQTVDTWGATTVALLGGFATEDAATTVNCLKACRVVTENTAEFLSYYSYNQVGICPMVDGYFTNGSCYFSGALSPKELYSNRTNQTNLDVASGSHVVQTYVYTIAPAYLGHYQNDYHLYE
Ga0005472J37260_104951	Ga0005472J37260_1049512	F088337	DGLVACRIMHRPIRPLDEDSSCLASCIFRLGQQCASGLPRTTHSLTAPATKFRVAPILQSIRLCRRQIFELPRISRPSAVPVMKPRVASIFRCSGITFDESPSCPEHCIFRLYRRWIFELPRISHPSALQVVESPSFPGLPPSCLASDKFSGLPRFPHLPAPAGCSPSFLGLHPPVSPAVNFQVAPNLLSSG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002649: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF121 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences