Sample 3300002646

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300002646

3300002646: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_10m (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300002646 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0055395 \| Ga0005265
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_10m (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	3178696
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	British Columbia, Canada
Coordinates	Lat. (^o)	48.7299	Long. (^o)	-123.5699	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005265J37294_100031	Not Available	541	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005265J37294_100031	Ga0005265J37294_1000311	F101265	GNEISGLKLAIVLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSEIVETN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.