NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002546

3300002546: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/9



Overview

Basic Information
IMG/M Taxon OID3300002546 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0103000 | Gp0061305 | Ga0006269
Sample NameDeep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/9
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size135800316
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeboreholeclay soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationMt. Terri, Switzerland
CoordinatesLat. (o)47.379Long. (o)7.1648Alt. (m)N/ADepth (m)562.73
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079376Metagenome / Metatranscriptome116Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI25318J35512_1040279Not Available590Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI25318J35512_1040279JGI25318J35512_10402791F079376MFDIVIRREPGRPCVSLGVSRVCRTTEEGGRQMRHRESDSLVVPMKAGNTAGGKEATHGSAE*

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