NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002532

3300002532: Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362B_J2.571



Overview

Basic Information
IMG/M Taxon OID3300002532 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0090290 | Gp0057578 | Ga0004277
Sample NameDeep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362B_J2.571
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size168044831
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomevolcanohydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationJuan de Fuca Ridge flank, Pacific Ocean
CoordinatesLat. (o)47.76Long. (o)-127.76Alt. (m)N/ADepth (m)290
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063475Metagenome / Metatranscriptome129Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24019J35510_1022881Not Available972Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24019J35510_1022881JGI24019J35510_10228812F063475LHHILDEAPLYGIVVGNQNGRNHGIPRNSGLSQQHVSNRGTLADAD*

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