| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002527 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099541 | Gp0056854 | Ga0006235 |
| Sample Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 41671696 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| Not Available | 6 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → intertidal zone → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Monterey Bay, California, USA | |||||||
| Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001620 | Metagenome / Metatranscriptome | 662 | Y |
| F005684 | Metagenome / Metatranscriptome | 393 | Y |
| F008525 | Metagenome / Metatranscriptome | 332 | Y |
| F011338 | Metagenome / Metatranscriptome | 292 | N |
| F011529 | Metagenome / Metatranscriptome | 290 | Y |
| F014267 | Metagenome / Metatranscriptome | 264 | Y |
| F028833 | Metagenome / Metatranscriptome | 190 | Y |
| F034891 | Metagenome | 173 | Y |
| F070936 | Metagenome / Metatranscriptome | 122 | Y |
| F072758 | Metagenome | 121 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI24926J35532_104257 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 907 | Open in IMG/M |
| JGI24926J35532_104722 | Not Available | 854 | Open in IMG/M |
| JGI24926J35532_104749 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 851 | Open in IMG/M |
| JGI24926J35532_105669 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 770 | Open in IMG/M |
| JGI24926J35532_107301 | Not Available | 670 | Open in IMG/M |
| JGI24926J35532_108827 | Not Available | 604 | Open in IMG/M |
| JGI24926J35532_109222 | Not Available | 590 | Open in IMG/M |
| JGI24926J35532_110229 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 560 | Open in IMG/M |
| JGI24926J35532_110483 | Not Available | 553 | Open in IMG/M |
| JGI24926J35532_112158 | Not Available | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI24926J35532_104257 | JGI24926J35532_1042572 | F070936 | MAINVQAALQEMREAIELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGMYSSRAAEDAGIVKIDGKTKYKNANW |
| JGI24926J35532_104722 | JGI24926J35532_1047222 | F072758 | MEELYREFEQLASKNEPLQCAGIMMAQALKIYKAALSEDEFKMITSKILESRDDIQMPDKPTLN |
| JGI24926J35532_104749 | JGI24926J35532_1047492 | F005684 | VYDTEESPLSNMRAVRFKPEVREGRLCNRNEPRQAYDDPVRVRFPDRGWNEQPRWSKSKQVRSALTGPGRMHS |
| JGI24926J35532_105669 | JGI24926J35532_1056692 | F011529 | MRWNKLTIDARGLKGIRLRSCKLWLDDTGFHPFLDPDEMIRPDMQKSMGVAFDELPKEAWDVMDRYDWEKAKRSKYATGN |
| JGI24926J35532_107301 | JGI24926J35532_1073011 | F034891 | MPKVGNKHYAYTAKGMAKAKAAAKKSGKKVSYGKRKRRT |
| JGI24926J35532_108827 | JGI24926J35532_1088271 | F011338 | ENEVGNLVVNFRNEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA |
| JGI24926J35532_109222 | JGI24926J35532_1092222 | F001620 | MDATTLVTIITMFVVTNTSSEFIKYDGLMDCLKDKRAIEKKKDGRRAICGPSMAEIDADGNIVSIKNKMPDQSGSLKLGGTAKSLTEKKKKKQTEVLTQD |
| JGI24926J35532_110229 | JGI24926J35532_1102293 | F028833 | AKKVAEEPTDFQIAEQILDNVPQHVIDEERGDMIRMLRKEQAQREMYDDPYMNWSGHR |
| JGI24926J35532_110483 | JGI24926J35532_1104831 | F014267 | AFAIQNIVIHINNIHKVDGVNFVKPSDILAKLFEAIPNEIPTAKNKYPNRGFIF |
| JGI24926J35532_112158 | JGI24926J35532_1121582 | F008525 | MLTFKESFNEVIEAKLKLPSGEKVAKELTKLGKKKKTSAVITNKFNLYIDGIKLDKFKDLKSAEDGLKDFLNLMGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |