Sample 3300002460

Basic Information
IMG/M Taxon OID	3300002460 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056898 \| Ga0005056
Sample Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002460 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053054 | Gp0056898 | Ga0005056

Sample Name

Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	908988387
Sequencing Scaffolds	30
Novel Protein Genes	31
Associated Families	23

Dataset Contents

Total Genome Size

908988387

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas suwonensis	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas suwonensis

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Rifle, Colorado, Usa

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → land → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.534762	Long. (^o)	-107.782602	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Rifle, Colorado, United States

Coordinates

Lat. (^o)

39.534762

Long. (^o)

-107.782602

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015326	Metagenome / Metatranscriptome	255	Y
F016408	Metagenome / Metatranscriptome	247	Y
F024972	Metagenome / Metatranscriptome	203	Y
F030363	Metagenome	185	Y
F030996	Metagenome / Metatranscriptome	183	Y
F033383	Metagenome / Metatranscriptome	177	Y
F033485	Metagenome / Metatranscriptome	177	Y
F035129	Metagenome / Metatranscriptome	173	Y
F037704	Metagenome / Metatranscriptome	167	Y
F040284	Metagenome	162	Y
F046735	Metagenome / Metatranscriptome	151	Y
F050468	Metagenome / Metatranscriptome	145	Y
F059829	Metagenome / Metatranscriptome	133	Y
F060593	Metagenome / Metatranscriptome	132	Y
F061881	Metagenome / Metatranscriptome	131	Y
F066733	Metagenome / Metatranscriptome	126	N
F073120	Metagenome / Metatranscriptome	120	Y
F075390	Metagenome / Metatranscriptome	119	Y
F075437	Metagenome	119	Y
F077980	Metagenome / Metatranscriptome	117	Y
F082441	Metagenome	113	Y
F087386	Metagenome / Metatranscriptome	110	Y
F097229	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
C687J35021_10000503	Not Available	30594	Open in IMG/M
C687J35021_10000750	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	24894	Open in IMG/M
C687J35021_10002463	Not Available	13136	Open in IMG/M
C687J35021_10002920	All Organisms → cellular organisms → Bacteria	11959	Open in IMG/M
C687J35021_10008201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6381	Open in IMG/M
C687J35021_10011987	All Organisms → cellular organisms → Bacteria	4986	Open in IMG/M
C687J35021_10018572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3717	Open in IMG/M
C687J35021_10025933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2969	Open in IMG/M
C687J35021_10027962	Not Available	2821	Open in IMG/M
C687J35021_10069142	All Organisms → Viruses → Predicted Viral	1527	Open in IMG/M
C687J35021_10072463	Not Available	1479	Open in IMG/M
C687J35021_10075391	Not Available	1439	Open in IMG/M
C687J35021_10086545	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1311	Open in IMG/M
C687J35021_10105961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7	1145	Open in IMG/M
C687J35021_10107432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1135	Open in IMG/M
C687J35021_10111312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1109	Open in IMG/M
C687J35021_10125635	Not Available	1025	Open in IMG/M
C687J35021_10138783	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	962	Open in IMG/M
C687J35021_10186823	Not Available	800	Open in IMG/M
C687J35021_10214416	Not Available	735	Open in IMG/M
C687J35021_10215389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas suwonensis	733	Open in IMG/M
C687J35021_10230642	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
C687J35021_10273666	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	635	Open in IMG/M
C687J35021_10289810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	614	Open in IMG/M
C687J35021_10293039	Not Available	610	Open in IMG/M
C687J35021_10316433	Not Available	583	Open in IMG/M
C687J35021_10325691	Not Available	573	Open in IMG/M
C687J35021_10352208	Not Available	547	Open in IMG/M
C687J35021_10375801	Not Available	526	Open in IMG/M
C687J35021_10383546	Not Available	520	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J35021_10000503	C687J35021_1000050349	F097229	VKVCSRQCPTCIYRPDSLFDLKKLEAQIADPYMAGFFKGHRVCHHTKDACCRGFWNKHKDSFALGQVAQRMNVVIFVAPGG*
C687J35021_10000750	C687J35021_1000075021	F030996	MSSLNTLTGRNGKFVVEETLVARTKKWDVSRSLASKSEWGDSDSAGYTNRAPGRRDATFNSEGVYDTTAEVWDIFVPEDISEVVLWMNATALYWAFPRALCHDFKISVNIDTEEVIGHTSDWGADGIFYGPGDAGAPSHTLP*
C687J35021_10002463	C687J35021_1000246322	F037704	MSSVRERVKAAQKELRDGGDLLPTRAAQLLMELTALLGNCLEEIREADHAYAVVLLGALETSEKANRAKIWAETSVEYQRKREARDTRELVQELVASLKYXLRSLEAEMRLSH*
C687J35021_10002920	C687J35021_100029209	F050468	MDALSSGGLHQTGKDAVGFQSAFRSGFEAYLAEDHQMPERLFRMIVCGRHAGTPEEGKEKFLLWSREIGPKGLCGFKTKRLFADVAEFRDESFFDLGCCLPRNSAGFQLLPHVAES*
C687J35021_10008201	C687J35021_100082015	F016408	MAVTESQVAGLELERVLPKVAMAFERDDKFYATIKKRPAEVISNRQMRVPIELRPGGSFGYYNPDGGDLGRGGGPTWDKAVLNSVFMVEALEYTKLTEWSTDNSRKAVEQSVRRMTATALDEIRRQIDSQLMQAGSGAIGTITSVATAGGVDTYTCTTDGFGVRLMRFGQTVQVFDITLATLRGSGTITELDVANKTVDVTPAIAGAVATDIXVTNGISAPASLPALYGIPYHHSNASTGTWLGFARSTTPEIRSNRVNGGSAALSLPSPRLAINLMGNRIGIDNNFNPNAWCHPCQKQAYEELGQLVTIIQKQAKEESLNMYFDNMQMAGAMVRTSYNWDQTRIDFVTDSLWGRAEILPIGFYRSDGRHIFPIRGASGGIAAADIFYMTVGMQTFVTAPAGTAYIDNLQVPSGY*
C687J35021_10011987	C687J35021_100119879	F037704	MTVRDHIESIRREVRDTDLLPDRAAELLNQLSALLGNVLDEIRDADMDYAVVLLKHLDSEEAANRAKIRAQTTPEYLRSREARDTKEIVVELARSLKYFLKVKEEEMRLSRYQRA*
C687J35021_10018572	C687J35021_100185722	F075390	MMKPLRYLWAITLCAFRNEVGAVGTWKIYAKTKKYLANGTVTLGAGVFKMSLHKTSASAAIIVLSTRSTFASIGSEISARGGYVAGGRNLGPVTGQWTVGASAKQYKFTYTTAGLVFTASGSSLINIRFALIRNSTGAGAGKVLCFASLSSAQFTIASPNTLSILPAATGVFTLA*
C687J35021_10020835	C687J35021_100208352	F033383	MRLRHWLRKENSGLFQTTLELAHYEERQGHTITLVNPSDEQVFYSNVDDPEIEIVHSQMGLSAYGDHHIPRFMWMHGEPLSSVGNGVSMKAIVDLAPMMDAFICMRQEERAVWNTIKRTYYVPKGIDLERFYPLSDPPEKLSGEPAVLYYENWRGSRNPLYLCIAMQQVWQKYPKARLHLYNCNNQKMYETFHALIKHNKWWPFVRTLTGPVQDVNLLLNKADIVVSCLYPLYARSIEAFGAGKALLAPGYRDCRYPFKCDLDPDSLARAIIQCHENYDQIDYRAWAEQNHDVAETVRQSIEIYERYL*
C687J35021_10025933	C687J35021_100259333	F075390	MSLHKTSASANIIVLSTRSTFASIGSEISARGGYVAGGRNIGPATGQWTVGASAKQYKFTYTTAGLVFTASGSSLINIRFALIRNSTGAGAGKVLCFASLSSAQFTIASPNTLSILPAATGCFTLA*
C687J35021_10027962	C687J35021_100279622	F030363	MVDFDFWACQRPLTHKWGSGQVWSRIVARFGAPDVAFGKTDGIPDGIAAVDTNTGFEWSHLPFEDNHFVFGYWDPPYDRLYKREGMEIWRTLRRIAILHTHIWPRAWLANAEREAMVAITMGPMKQIRCLQVFRKKIA*
C687J35021_10069142	C687J35021_100691422	F016408	VAVNEAQVAGLELERVITKLRVLFERDDKFYSSIEKRNVEKISNRQMRIPLELRPGGAFQYFNADGGDLGRGGGPTFDKATLTAVFASENIEYTKLAQWSTDDARKSIINSVRRLTATAFDELRRQLDSQMQGSGNGVIGTVTTDTPAGGENVIDLTTDGFGANLMRYGQTVQIFDTTLATNRGKGSISFWDKENKVIHISPQVAGVVXGDKIVVDGISDPTALPGFFGVPYHHSNASTGTWLGFSRATTPEVRASRVNGNSSXLTLPLPRIAINKIGNRVGEDENFKPEAWLHPAQAQAYEDIGQQVTIIQKMAKDEGLNMYFGDNMQLAGAPVKRHYQWD
C687J35021_10072463	C687J35021_100724633	F024972	MKITKVTKTYFETEGERVYFFEPLDEEMTVSELQELMNENEKFLLGEIQKMKKEQITEGSVIDKKGE*
C687J35021_10075391	C687J35021_100753913	F033485	MMEIIIKGKHDHFGKTRSEQEKNMRKEWGCTMTDEQLDKLKFLEKKVKDKSGSKKNFITGIDIDK*
C687J35021_10086545	C687J35021_100865453	F073120	MELSVTEYSKRLGVTRSAVLLQIKEKRLPKNVTVKKIGNTYSLSVRGQKK*
C687J35021_10105961	C687J35021_101059614	F037704	TGDLPPTRATELLIRLSALIGNTNEEIRGADSAYAAVLLRELEQNEKANRARIRAETTEEYARKREARDTKELVLELTRSLKYLIRSAQEEMRLAR*
C687J35021_10107432	C687J35021_101074322	F040284	VALFFHSDDVDHLISLKEAVAIAESALKDIPLRAGVNAPRKRLNLHRNGGEYPYDTVLNVYAGGSA
C687J35021_10111312	C687J35021_101113122	F037704	MVKAIQVEVRDADLLPTRAAELLMKTTALLGNCQTEIRQADYDYAVVLLACLGGDEAANRARIRAEISPEFRRKREARDTRELCVELSRSLKYFLKAAAEEMRLSGPQP*
C687J35021_10125635	C687J35021_101256352	F061881	MSLSRDSRQERKLKALRRAQFRLTQRFEYIDWEEDVLIPEVEALKAGRPVFGLTDGRMFEIEIEESHADPDQTPPDHTEPDPGTR*
C687J35021_10138783	C687J35021_101387832	F087386	MTKQELFKKYSIDESHNVWDNSIDNWMSVEVYRIMHNGELPPPDDKSVNWITEFLDKQEDMKWWVANVMSRKDWGSLYLTAKRMVYSLSEQILSLNN*
C687J35021_10186823	C687J35021_101868231	F077980	PAVSSGQRNGGGTMKRPSYEIDETTFPAEAYTVKGSRGVAWRVYGWETEPTEDTEWDGIEARTGKVVCVMVGDDQRFAFDPEELTPLDDLAYCAECGQVGCQHDGRER*
C687J35021_10214416	C687J35021_102144161	F066733	VKTVGQGMDRARFFTATLPAPASQTAGTTATEATSNISAIEIVPSQITGAYIIADYDLIENSPYDFLKTIVETSAARYDDFVATDMLDTVSAEGTLTPGLWVNAETGATITDSDLASSQFDETGIAFGRQYLENQGYLRGGVKPVCVMHPKQWRELITSTNVTSLATQSVPDIWLKGHLEELMGVQIVVSNAVQAINNQTYDAYNALMFVPRHSYGIAIKRDVTVKFHDIGEDNTVRVNTTWRTK
C687J35021_10215389	C687J35021_102153891	F066733	TVGQGMDRARFFTATLPAPASQTAGTTATEATSNISAIEIVPSQITGAYIIADYDLIENSPYDFLQTVVETSAARYDDFVATDMLDTVSKEGTLTPGLWIDAETGATITSSDLASTQFDETGIAFGREYLENQGYLRGGVKPVCVLHPKQWRQLITSTNVTSLATQTTPDIWLKAQLEELMGVQIVVSNAVEAINNQTYDAYNALMFIPRHSYGIAIKRDVTVKFHDIGEDNTVRVNTTWRTK
C687J35021_10230642	C687J35021_102306421	F082441	MSVDQGVAQAGEVTIGPDLKIPPHYRPGKSCSPGRGYNASAEAPNYPSTYPKMNLRVFNGEVIGFLFELDAKEXWKPWYDQPEGKPTTHEGGEPHYTQTIYIKKGPTAEECKVSKSPYGQ
C687J35021_10273666	C687J35021_102736661	F015326	MCLSFFQGNMECCEPCCGKPCNTNDGIYCCLSFFPGCFCVGPKVYAASQDQACAFVNHCIPFLALLVAIVPIVGGILAFILWCFIRTGIRFNLRKKHGIGDTSKWHMCDCCGIWFIIPAPCFSCQELRSCQKEHWDWYAAFNDKKFPAETQIDPCYMFCVE*
C687J35021_10289810	C687J35021_102898101	F035129	IAIEFQEHGKFTGIIGKAYVTEKAVEVVTFAEQNGVVIPFAFIDTILEKESKTEGVYNVKCRNQLGVLSTGTIDLHDRLNPKIILTTDKGITVTNISNVGRKMKKEFMPKVDLGK*
C687J35021_10293039	C687J35021_102930392	F024972	MKITKVTKQYFETEGERIYFFEPLDEELTVSELQELMDENEKFLLGDILRMKKEKK*
C687J35021_10316433	C687J35021_103164332	F075437	LSEKSTFHETKEVVTRLREPLKIKAIPYATTKLRGHQIQLELNLDWTQIDQLTGKDSYIIKLIENVKELIIGPMESKYLGVIMPEEFNQKASSV*
C687J35021_10325691	C687J35021_103256913	F060593	MIYPRLPDDQYKKYLFQARSQIGAILNIFRCYGLEPFVDGAIEECMKITENFAMV
C687J35021_10352208	C687J35021_103522081	F061881	MSLSRDSRQERKLKAIRMAQFRLKQRLEAIDFLEDVLMPEIEALKAGKSVLGLPENVAFDIQVITDADPRYPATGESD*
C687J35021_10375801	C687J35021_103758011	F046735	RKEIVRVILNVFERLLLRNIVPQIQGWNYAYLKEARELIEGLFIEQEEAELHFEQEGIQVKWQLQREDGTPIPQERDIPVSDGLKAKIGKYLKQLDKEEKLEFAHMTLYGKFLGL*
C687J35021_10383546	C687J35021_103835461	F059829	SPALTPPTGLIAANNASVLYRVLRHSYFSCILGNEAPTVGLTTNRMMGFISENFLPHQIVDTTQPEINWPGLKFDKATIVMSQYMPSQDGVNDADLGDYSAAGETFAWLNFGPQGDDAYIRLYIAQSSKFAMGFTGFKGAREDNQVSGQILFGGNLTVKALRLSRILHGFTA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002460: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences