Sample 3300002380

Basic Information
IMG/M Taxon OID	3300002380 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055645 \| Ga0003602
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002380 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0055645 | Ga0003602

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	25334156
Sequencing Scaffolds	21
Novel Protein Genes	27
Associated Families	24

Dataset Contents

Total Genome Size

25334156

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
Not Available	15
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Anophelinae → Anopheles → Cellia → Pyretophorus → gambiae species complex → Anopheles gambiae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Anophelinae → Anopheles → Cellia → Pyretophorus → gambiae species complex → Anopheles gambiae

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003132	Metagenome / Metatranscriptome	505	N
F003598	Metagenome / Metatranscriptome	477	N
F003618	Metagenome / Metatranscriptome	477	N
F004578	Metagenome / Metatranscriptome	432	Y
F005173	Metagenome / Metatranscriptome	409	Y
F006499	Metagenome / Metatranscriptome	371	N
F007021	Metagenome / Metatranscriptome	359	N
F011472	Metagenome / Metatranscriptome	290	Y
F012322	Metagenome	281	Y
F012550	Metagenome	279	Y
F013061	Metagenome / Metatranscriptome	274	N
F013607	Metagenome / Metatranscriptome	269	N
F016118	Metagenome / Metatranscriptome	249	Y
F023327	Metagenome / Metatranscriptome	210	N
F026797	Metagenome / Metatranscriptome	196	N
F028730	Metagenome	190	Y
F029726	Metagenome	187	N
F033725	Metagenome / Metatranscriptome	176	Y
F059680	Metagenome / Metatranscriptome	133	N
F064421	Metagenome / Metatranscriptome	128	N
F067669	Metagenome / Metatranscriptome	125	Y
F070102	Metagenome	123	Y
F070903	Metagenome / Metatranscriptome	122	N
F073535	Metagenome / Metatranscriptome	120	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J29595_100270	All Organisms → Viruses → Predicted Viral	2837	Open in IMG/M
B570J29595_100364	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2544	Open in IMG/M
B570J29595_101653	Not Available	1258	Open in IMG/M
B570J29595_102128	Not Available	1105	Open in IMG/M
B570J29595_102862	Not Available	952	Open in IMG/M
B570J29595_102949	Not Available	938	Open in IMG/M
B570J29595_102982	Not Available	933	Open in IMG/M
B570J29595_105666	Not Available	686	Open in IMG/M
B570J29595_105917	All Organisms → cellular organisms → Eukaryota	671	Open in IMG/M
B570J29595_106483	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	644	Open in IMG/M
B570J29595_106761	Not Available	631	Open in IMG/M
B570J29595_107705	Not Available	594	Open in IMG/M
B570J29595_107914	Not Available	587	Open in IMG/M
B570J29595_107999	Not Available	584	Open in IMG/M
B570J29595_108018	Not Available	584	Open in IMG/M
B570J29595_108527	Not Available	567	Open in IMG/M
B570J29595_108866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	557	Open in IMG/M
B570J29595_110931	Not Available	505	Open in IMG/M
B570J29595_110937	Not Available	505	Open in IMG/M
B570J29595_111045	Not Available	503	Open in IMG/M
B570J29595_111076	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Anophelinae → Anopheles → Cellia → Pyretophorus → gambiae species complex → Anopheles gambiae	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J29595_100270	B570J29595_1002702	F023327	MQIDFMCAVVEDYIYRLKGVQVRIDRRAVASDGRQMAMLMNAYQIASNGNKEHGHI*
B570J29595_100364	B570J29595_1003641	F033725	MITILNREIPNQLEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKDFNSAERKEYPTVEELEIDGYVYKAQMKLTVRDTKLIEKITLKKEKGYISEMLAVMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYVMFIAQKIGQQ
B570J29595_101653	B570J29595_1016531	F013607	RTAPPRSGRPRSSSREKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERLAAVRRRELCVLCFRHLDTKRCWSLGKLNNCNVRGCGRGHNYLLHDVLQNEEAMMVSAMPGQTGRQESSLRCRQMVAAENEGQCFRLNVLYDWGASVSMISXEAVEVMGLIS
B570J29595_102128	B570J29595_1021282	F026797	MAASCSDGGAAVCSDSDEHIRHVSGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTSTDLYIDSIRLVGFCGAGDINWAIVTRMKESDNPPRESFHGIFPKECLPMLHYMRPQFRFLIYFGQNNGRVNMADELDRFFYDMEKVA
B570J29595_102772	B570J29595_1027721	F029726	LAAQYAINSASQSIEPNCRMNVQRVHXSTYSLEFKNLSEAKLKISTLCDVPQAYTSLTVKFEEVLPNGGNNVVKTVRNIVARPKPERENYVLIENLTVPCNGKGQAEYIGKAFGQIHLKDNRTVPVSGESDKPMPSNLPN*
B570J29595_102862	B570J29595_1028621	F070102	LWSREHDTDSDWPSRHNIEWESGVPYDFFTKYSKQLGLGNDADDYYYWMNALEENEDNLDNETLTVDNVIVPKYYTFDVETYEDRVEQVHVIFEGQVVRVK*
B570J29595_102862	B570J29595_1028622	F073535	LGQGEVFDFYDFRETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLF*
B570J29595_102949	B570J29595_1029491	F005173	MRLDESADGHFSYGPSLGLFREPFINERYLFGDSQYHNCKPYLDMEKEFFSNNAAIVREVYFDTDILLGADSDEDVGVEEAVNAEDLVPVLSAEEIQWQHAAANDIMNMEIVRVTPVNSDSEDEETMERVASPVVVEAVSDVTDTNEATGSADSVVNNSPNLVIAEEGDYVEEAVEGRADVPSGPGPFSEDVTMDDFLPRPTRGSVVFLAFSDW*
B570J29595_102982	B570J29595_1029821	F013061	DDPYAFRPETTVDRQDYQPASEEQVKSDLRYHLRTIYKLRLIEKNGSGKRYQCLMCLPKYKLIWASKTTYQHLEKHVVAVHPRQHKTYKELMAKKSGYKRKRSPSPNQSTSDSPKVDQSVSKRIKTPGGGGTPVLSFYSQQDYDEDALIEVVMNMLPFEVCAML*
B570J29595_104326	B570J29595_1043261	F006499	ERCKGEQLHLDVKHEPREVDFVPFRPGNGISIYEFFQRFEDWSRGQMSQVQRANVLYNRHLDFSVTDGNKELEDAKGXYPLMKSILLEKWGIADIVCDQYLEGIKRIKMPSDPKDKVGMLTYVKNAYSRLVTLTKLEVDRGQPVPGLEDYFLSNQFLKRVHRLLPEELGSRFLMKIQENGESYYLMKGKPYMDRIIALLRCYYKSLEIALEDRPDLPIITKSGTVSSAGINLMSTSGYASGQESHSPVEPPREPAQLTVM
B570J29595_104475	B570J29595_1044751	F028730	DSVVCSYGRFGLSDGWTPQSGRFENFPSPRTVLQLDSQITFPKNATLEQTTAIMKFCGQMKITPNWLCVDRTGNGAGIHDALCTLFGKETMGVNYSWAATDTHVLGDDSKKANELYHGVVTELLFGLAKYLEFGYLKISPGFRTEELVRQATSRRYKQRGQGLVRVESKADYVKRTRSKSPDALDSLSLLVYLMRQRSGVAADMVTNKPKEKRIRERKLQSLVDVMSFVDMSE*
B570J29595_105666	B570J29595_1056661	F070903	SLIAPETLIDSIPPSDLDVETQPAENPPQAPATHEIVDEFDDAQINNNKTNELAFVNSLHAHRDLSKTFRDTLRSRKEKLITFFLSKHDQYVKIPGVGEHTESDID*
B570J29595_105917	B570J29595_1059171	F059680	MIAELKFITAGPTRYDRGVATSLRAAVNKREQQLYQEYLTRLRLKDREFFHTPAGTVGPLERGLIKATNSGENFEGWVVGFYGEWSDTLAKXPEKLADAQVVRWQSKYGREPTIQQRAWLVSKVRSDIAMMATKLNAQVIIKNLQNMHEKSLPPTGARRRMELEYQDWARLQGRGPRTGGPFDRTIGWRSW*
B570J29595_106483	B570J29595_1064831	F033725	MITILNREIPNQLEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKEFNSAERKEYPTVEELEIDGYIYKAQMKLTVRDTKLIEKITLKKEKGYISEMLAVMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYVMFIAQKIGQQANDQATAELEPSNAAVHI*
B570J29595_106761	B570J29595_1067611	F003598	YSPYKPTIEETIKPLLSTPDLSMEIESLLSDIHEVHRINLTTLGQEFQTLDIDIQNELMDLSNVNEVLQKAANIKEITIFDPTDIKLEKITESNTALKIVTWAVAILAFGFIIFCIVSCCPVQIFAMLKATFKAILASCCPVQIFAMLKATFKAILALLTCTCTTAFMTTSSITRFMRRRQNLHASPATNSDLNESSDQPGATITYMPHS
B570J29595_107705	B570J29595_1077051	F003132	FSGRLEDLRVFRKGWEEYGRQYLPAEPERVLMEILHTQALGPKARRAVEQAHSLGTTWTYLEDHLREQRDRIDSLLSDTLRTGELTSPEGLYLYYRKVCQFLDMDEGERKVNDLITEDQLDMLLCMLPFEEAVKWKQWRGEEPLEDMSLSLYDFCWQRAVSMRTQVLSLEQLEEPVPPAAWHAGYPRWFGPCILGDI
B570J29595_107914	B570J29595_1079141	F004578	KERPLEGGSRSRGVKEMVDVFRCLLAPHCGDRHRAMACEKFKGLSLPHRQSIIAEQELCANCLRHSENDIRRRKECLRRAAEPHWVGSSVRRPGRTPSPVEEMPTLGASAAGKVIFACRMEVMVKTKADLRQGEYGADLSVLFCPTRQMTAVVESVAIEKGIPWRAVPEVTVMLGDGRRETSTKLFLIEVKATRS
B570J29595_107999	B570J29595_1079991	F012322	GKLLTKQFAELTMDEVRAHAQKYQDKSSREAQNSEMLIQCLKASITRTVYNKVYLQMSKYIIYRKRTMEPIEDGVCFLKNIIDNYHSNTRSSTKQIRKQLAQLHYYMKNVAKGDVSKLCEHTRQLTYELNAAGETTSDLLANLIEALKEAPDTNFQRWLGNQVDLWSMRKLDWAEDGSDLMTEAEVYYQEAINT
B570J29595_108018	B570J29595_1080181	F012322	LQMDKYIIYRKNTLEPVEDGVCFLKTIIDNYHSNTRSSTKQIRKQLAQLNYYMRNVAKGDVSKLCEHTRQLMYELNATGETTNDLLANLLEALKEAPDSNFQRWLSNQVDLWSMRKLDWKADGSDIMEEAENYYREALSTHKWGKKAQRLDTVYAFKAEGSETEDEEPDGTNQGETIKALTAKLKTLEAKSANW
B570J29595_108527	B570J29595_1085272	F011472	MDPFAQQVQRIENNDKVXEIVEAXRLXPIADNDVKTQINASLEKILTPAAHKIPETQKKITEFEXTEPEFSYHDIAERQKYRPMKHGIHYLDEDSTLYYNSAIEASAWEDENVVATTARDAAQAAGNTPAAIQTAYDNALRAQQGINT
B570J29595_108866	B570J29595_1088661	F067669	RGRGGSTLWVFWNKSALRADLRVFQNIGCRVLGCVVPRGPQKHPSAGPWGASYRRGVTKDARPHLRKGHGLDLVDDGTRSRGRGGSTLWVFWNKSALRADLRVFQNIGCRVLGCVVPRGPQKHPSAGPWGASYRRGVTKDARPHLRKGHGLDLVDDGTRSRGRGGSTLWVFWNKSALRADLRVFQ
B570J29595_109290	B570J29595_1092901	F003618	KFTNITQAIPMKTLYIPVRMHQFAKIVPFQQVFSQITNLKITLRNLDPTANTHSEELQGKEVNYVKSSYPRSMNQNSLRCAERNGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFAEVNKKGLSCIEHLANIARMLGLEFLRGTPPQILMEIIALFPQTVIHPVLDSNTITLQE
B570J29595_110931	B570J29595_1109311	F007021	GPPPRRNQEAGQATAPVLGLGLEAIQGMTNAMNAIANQVIRSSGRSGRNAGWPYFDGTFRDYPGFKRKFESFRTTYHRGTPTRELFQQFREMCLPEKLSIRIKSANTMENAWTRLDAWFGDKNLFIXDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGAL
B570J29595_110937	B570J29595_1109371	F012550	VTLVLRLCYACVTLALRLDYTWVTLGLCYACVTLVLRLRYAWIALGLHSGCVTLVLRLRYACFTLANLT*
B570J29595_110937	B570J29595_1109372	F012550	MHYACVRLELLLGYACITLALRLRYACVTLVLRLCYACVTLVLRLRYAWITLGLHSGCVMLVLRLCYA
B570J29595_111045	B570J29595_1110451	F064421	AIRNRDADLIRSYRRALHSGIARAHETTNREAGARGWDPAAVDCMMREVEESTETLLPAAEQVLRELEEEARANWEERAIHQATQVTNLAGEAFETLSENRWSRRDCLEYQEELDWGMRTFRRIYNEIDTASMPAKMRRAARARLDQVNSEYQRATRVVERLLQAHG
B570J29595_111076	B570J29595_1110761	F016118	ASGEQEPEQEGPRQCPVFGCTRGHDPGDCPTFLDMTPKERLDMMHAKQLCLLCLRHPLSVGCEAASKGACCPWGECDRPHHAALHEVLKAGGPSWPKEGADPPKGSVVAVDGGIPGIAKLLGSLLESLGIDPNDLEVRIGIRQAGEPGRSHAEDARGPGETKADTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002380: Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences