NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002224

3300002224: Marine microbial communities from the Baltic Sea - M1t6 BS2 (105N)



Overview

Basic Information
IMG/M Taxon OID3300002224 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110183 | Gp0084988 | Ga0022193
Sample NameMarine microbial communities from the Baltic Sea - M1t6 BS2 (105N)
Sequencing StatusPermanent Draft
Sequencing CenterKarolinska Institutet
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117009831
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster2
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)58.133Long. (o)10.0Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003647Metagenome / Metatranscriptome475Y
F005817Metagenome / Metatranscriptome389N
F019651Metagenome / Metatranscriptome228Y
F023593Metagenome / Metatranscriptome209N
F027690Metagenome / Metatranscriptome194Y
F028322Metagenome192N
F033501Metagenome / Metatranscriptome177Y
F033962Metagenome / Metatranscriptome176N
F057667Metagenome / Metatranscriptome136Y
F061041Metagenome / Metatranscriptome132Y
F104568Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
M1t6BS2105N_1154786Not Available676Open in IMG/M
M1t6BS2105N_1161161All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1553Open in IMG/M
M1t6BS2105N_1309943All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster1399Open in IMG/M
M1t6BS2105N_1324608All Organisms → Viruses → Predicted Viral1854Open in IMG/M
M1t6BS2105N_1398571All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter518Open in IMG/M
M1t6BS2105N_1412591All Organisms → Viruses → Predicted Viral2758Open in IMG/M
M1t6BS2105N_1496551All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp.562Open in IMG/M
M1t6BS2105N_1526383Not Available2057Open in IMG/M
M1t6BS2105N_1527397All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster1923Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
M1t6BS2105N_1154786M1t6BS2105N_11547861F023593MNEIDELAQYQADVILETLKEQVEWSIADYDLDGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG*
M1t6BS2105N_1161161M1t6BS2105N_11611613F057667MEDIILNHWQSILFALLIAARAIFSLIPSDSQAVKIFGWIDIVITALVGGDRRKNKNKKKAK*
M1t6BS2105N_1309943M1t6BS2105N_13099432F028322MINMKLLDFWGSFQTNEKRMIKILLFLLPLIVVFIYLGDISNKISAKKLNLEVAKANFDYVYDKALNFQKYSLAQKALFDYPEKKDFIFSESKRYPLIDFQLGEEEGIMFIVFKSESVVNYAQFLESLVNHPEIEIISLSITPNSEFQQVKAFLQ*
M1t6BS2105N_1324608M1t6BS2105N_13246085F005817MRSDLLSRLKPEFKQGLEDNKTRYPASIHDLEFVLGQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
M1t6BS2105N_1324608M1t6BS2105N_13246086F003647MVMCEWTLADVKNRASNKAFAKQTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTE
M1t6BS2105N_1398571M1t6BS2105N_13985711F061041NLVLGINQNPLVMEDLVHHQEMERKKVSVTKENLVLQKRITRNQQDSQIIQNTLEKKHLKVHLLVERKKALVLMERRSLKVEVIDLKALPSKNIVKKELKSKIF*
M1t6BS2105N_1412591M1t6BS2105N_14125916F019651MTTLEKFQEEANINFIQTPSHADIEIGELNTADGYELFYVTQDVQNLQFDSEVYYYKPDFDTIMIEIKNAYTRNQTVPGSTPINVCVYDIEDWFDEYDMLNYLESEMDEESFEAFTNEEE
M1t6BS2105N_1412591M1t6BS2105N_14125917F033962MTMTELKKYMAEQKRIKVIQWNKERQGDHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWVFNNTKNRELFTK*
M1t6BS2105N_1496551M1t6BS2105N_14965512F027690MGGAPKKIGRATKKAAQGLEKMLVEPLEKPVKKAVNVVEKVGAEIVEPLERPVKKLTREVVDTVMGIDKYDRNPPEPEITPEVTPEIVPDEKPTITTRYATRGKRSGQGGTIMEGYGVT
M1t6BS2105N_1526383M1t6BS2105N_15263832F033501MNAIEFINEMDYLAQVHFAEFGYDTCSHSEKKAVIKLLLHNLNK*
M1t6BS2105N_1527397M1t6BS2105N_15273973F104568MKKIIIHFLFVASCLSWVLVFILSFIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSAQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYLSSSKTMQFGITAIGSLTPKGSSIKGSLNLEESSFSSLTIKKNYGSFFFQSQDGLSILSLKNFLHPFVDEQFPIKFNFRNNTIAIPNLFLSNEV
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