| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002105 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053054 | Gp0056897 | Ga0005055 |
| Sample Name | Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 912491392 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 16 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria | 1 |
| All Organisms → cellular organisms → Archaea | 10 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp. | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 2 |
| All Organisms → cellular organisms → Archaea → DPANN group | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Rifle, Colorado, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004010 | Metagenome / Metatranscriptome | 457 | Y |
| F065251 | Metagenome / Metatranscriptome | 128 | Y |
| F086262 | Metagenome | 111 | N |
| F091390 | Metagenome | 107 | Y |
| F094578 | Metagenome / Metatranscriptome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C687J26635_10002781 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria | 12757 | Open in IMG/M |
| C687J26635_10004725 | All Organisms → cellular organisms → Archaea | 9437 | Open in IMG/M |
| C687J26635_10032024 | All Organisms → cellular organisms → Archaea | 2937 | Open in IMG/M |
| C687J26635_10037082 | All Organisms → cellular organisms → Archaea | 2667 | Open in IMG/M |
| C687J26635_10042332 | All Organisms → cellular organisms → Archaea | 2441 | Open in IMG/M |
| C687J26635_10073372 | All Organisms → cellular organisms → Archaea | 1678 | Open in IMG/M |
| C687J26635_10080048 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp. | 1577 | Open in IMG/M |
| C687J26635_10089873 | All Organisms → cellular organisms → Archaea | 1453 | Open in IMG/M |
| C687J26635_10099688 | All Organisms → cellular organisms → Archaea | 1349 | Open in IMG/M |
| C687J26635_10100160 | Not Available | 1345 | Open in IMG/M |
| C687J26635_10103293 | All Organisms → cellular organisms → Archaea | 1315 | Open in IMG/M |
| C687J26635_10131069 | All Organisms → cellular organisms → Archaea | 1109 | Open in IMG/M |
| C687J26635_10133318 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1096 | Open in IMG/M |
| C687J26635_10165545 | All Organisms → cellular organisms → Archaea | 939 | Open in IMG/M |
| C687J26635_10306174 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 611 | Open in IMG/M |
| C687J26635_10320392 | All Organisms → cellular organisms → Archaea → DPANN group | 592 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C687J26635_10002781 | C687J26635_1000278111 | F004010 | MPLGSNVSANMRELYKDNRKKGKARGANGKPRSRKQMIAIAINAANKATGRKRKK* |
| C687J26635_10004725 | C687J26635_1000472512 | F094578 | MIEKEKPKWPLQRLKGMYFAMHCWKCKKFELPMEEYKQKCENNIQKIIDNLEIKEMKFKEFNEIIKNSTFCKFEKREFNNKCPICKKLRIKF* |
| C687J26635_10032024 | C687J26635_100320244 | F065251 | MYLRSFNKSGKKYYYIAKAVRKGTKVIQKSVLYIGTADKIYEKLRKH* |
| C687J26635_10037082 | C687J26635_100370822 | F065251 | MYLRSFIKGRKKYYYIAKAVRKGAQVIQKSILYIGTADTLYEKLISLKKK* |
| C687J26635_10042332 | C687J26635_100423325 | F091390 | MSTKSTTLRIDDSTKLKLESLDFVRKHTFNQILLELIEHYEKTKKRK* |
| C687J26635_10073372 | C687J26635_100733724 | F094578 | MYFAMHCWKCKKFELPVEEYKKMCEDNIQKIIDGLEVREMKFKEFNNIIKNSLFCTFEKRDFSNDCSICKKFGVHGRL* |
| C687J26635_10080048 | C687J26635_100800481 | F086262 | MQSSLEAQCQMCRQKINIGDEIVRVASGIWIHEYCNEKTPEAQNNQDNLQDLNKKLLESKTDRLKSLKCIYCGQGSFMKSKLETAALDDGTIITKKLYPCYTCGHIMEFIENISS* |
| C687J26635_10089873 | C687J26635_100898733 | F094578 | RLKGMYFAVHCWKCKRFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNEIIKNSTFCKFEKREFNNKCPICKKLGIKF* |
| C687J26635_10099688 | C687J26635_100996884 | F094578 | MDNKEERPKWPLRRLKSMYFAMHCWKCKKFELSVEEYKQSCEENIQKIIDGLDIKEMEFREFNEIIKHSTFCKFEKRGFNNNCLICKKLGI* |
| C687J26635_10100160 | C687J26635_101001602 | F065251 | MYLRSFKKGKKKYYYIAKAVRNGGKVIQKSILYLGNADNIYNKLHTK* |
| C687J26635_10103293 | C687J26635_101032932 | F065251 | MYLRHFTKGKKKYYYIAKAIRKGVSVIQKSVLYIGTADTLYEKLISLRKK* |
| C687J26635_10131069 | C687J26635_101310691 | F094578 | KKERPKWPLQRLKSMYFAIHCWTCKNFELPMEEYKRRCEENIQKIIDNIGIKEMKFKEFNNIVKSSTFCQFEKRNFSNNCPI* |
| C687J26635_10133318 | C687J26635_101333182 | F065251 | MYLRSFIKGRKRYYYIAKAVRKGLQVIQKSVLYIGTADTLYEKLKNLKKK* |
| C687J26635_10165545 | C687J26635_101655452 | F065251 | MYLRHFTKGKKKYYYIAKAVRKGVSVIQKSVLYIGTADTLYEKLISLRKK* |
| C687J26635_10306174 | C687J26635_103061741 | F094578 | MNNQKERLKWPLQRLKGMYFAMHCWKCKKFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNDIIKSXTFCKFDKRDFSNNCPICKKLGISRRGL* |
| C687J26635_10320392 | C687J26635_103203922 | F065251 | MYFRHFTKGSKKYYYIAKAVRKGKKITQKFVLYIGTADTLYEKLKTLKKN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |