| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002097 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053054 | Gp0056901 | Ga0005059 |
| Sample Name | Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 113674719 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Rifle, Colorado, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008189 | Metagenome / Metatranscriptome | 337 | Y |
| F060593 | Metagenome / Metatranscriptome | 132 | Y |
| F100657 | Metagenome / Metatranscriptome | 102 | Y |
| F105003 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C687J26620_1001167 | Not Available | 5767 | Open in IMG/M |
| C687J26620_1008677 | Not Available | 1680 | Open in IMG/M |
| C687J26620_1033086 | Not Available | 664 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C687J26620_1001167 | C687J26620_100116713 | F008189 | MDYQAELKRLNEGGNYWKPKVGQYKVKTLTELEEADPFVRKHEGAEDEFSPQAKIIILVNGEEKIWTFGKGKTPASTYGQLIDFATKNNNSLKDKEFTVVVKSDGTKNDYTIV* |
| C687J26620_1001167 | C687J26620_10011675 | F105003 | MTNETGQINYRKLLYFSDNKILVHFKDLDGIFYNGLIIDLSEKKLTLVLYERVRGTIPILLECIKTDSIQEFKKL* |
| C687J26620_1008677 | C687J26620_10086771 | F100657 | MTQITISYTTSVSTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL* |
| C687J26620_1033086 | C687J26620_10330861 | F060593 | MIYPRLPDDQYKKYLFQARSQIGAILNIFRCYGLEPFVDGAIEECMKITENFAMVVRGKEKPIHILKEPKRRATE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |