| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002057 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085351 | Gp0061081 | Ga0011054 |
| Sample Name | Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA1-P2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 173710691 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium MS190-1F | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Macroalgal Surface Microbial Communities |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Surface (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Vigo, Galicia, Spain | |||||||
| Coordinates | Lat. (o) | 42.52 | Long. (o) | -8.82 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028441 | Metagenome / Metatranscriptome | 191 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SA1_1001750 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium MS190-1F | 3252 | Open in IMG/M |
| SA1_1027329 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium | 570 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SA1_1001750 | SA1_10017506 | F028441 | MKHTMTLKQLIKLENKADTVWVISPTLHYDTENKDFSELVSVNLDAKKKYRYIVPATKQVEKNLKLYQKMYKLTDKEMFTNFLLLPDCDFNGFLTETVIYNAGKECIACTAPPLESTNDIIKYGPKTAKAMAKQFKTTWKKYMRMNP* |
| SA1_1027329 | SA1_10273292 | F028441 | MTLKQLIKLENKATEVWVISPTLHYDVDNKDFTEIVSVNLGEKTKYRYIVPASKTVLKNVKLYKKMYDISDEEVERNFLFLPETDFNPFITECAIYNASTEGVAVAAPATEDSNDVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |