NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001820

3300001820: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM5, ROCA_DNA135_2.0um_27f



Overview

Basic Information
IMG/M Taxon OID3300001820 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0096913 | Gp0056128 | Ga0016723
Sample NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM5, ROCA_DNA135_2.0um_27f
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size13330863
Sequencing Scaffolds19
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available4
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → plume front → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)12.4145Long. (o)-52.2197Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001293Metagenome / Metatranscriptome729Y
F002185Metagenome / Metatranscriptome585Y
F007756Metagenome / Metatranscriptome345Y
F013897Metagenome / Metatranscriptome267Y
F016980Metagenome243Y
F025306Metagenome / Metatranscriptome202N
F033465Metagenome / Metatranscriptome177Y
F045808Metagenome / Metatranscriptome152N
F046404Metagenome / Metatranscriptome151Y
F049702Metagenome / Metatranscriptome146Y
F051209Metagenome / Metatranscriptome144N
F051983Metagenome143N
F054422Metagenome / Metatranscriptome140Y
F054941Metagenome139N
F058431Metagenome135Y
F062836Metagenome130N
F075400Metagenome / Metatranscriptome119Y
F077382Metagenome117N
F105360Metagenome100Y
F105367Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ACM5_100356All Organisms → Viruses → Predicted Viral1989Open in IMG/M
ACM5_101664All Organisms → Viruses → Predicted Viral1281Open in IMG/M
ACM5_102679All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1516Open in IMG/M
ACM5_102989All Organisms → cellular organisms → Bacteria → Proteobacteria823Open in IMG/M
ACM5_103586Not Available863Open in IMG/M
ACM5_103826All Organisms → Viruses → Predicted Viral1318Open in IMG/M
ACM5_104145All Organisms → cellular organisms → Bacteria587Open in IMG/M
ACM5_104283Not Available557Open in IMG/M
ACM5_105782All Organisms → Viruses → Predicted Viral1399Open in IMG/M
ACM5_105940All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae905Open in IMG/M
ACM5_107283All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium734Open in IMG/M
ACM5_107307All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.555Open in IMG/M
ACM5_108180All Organisms → cellular organisms → Bacteria634Open in IMG/M
ACM5_108331All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae744Open in IMG/M
ACM5_109458All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium882Open in IMG/M
ACM5_109677Not Available748Open in IMG/M
ACM5_109928Not Available562Open in IMG/M
ACM5_110378All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01785Open in IMG/M
ACM5_111902All Organisms → cellular organisms → Archaea522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ACM5_100356ACM5_1003561F051983MKRTIIDVCAMTSFVIVVMLGASALNVYFTRESRIKENRDWMESVIEKEVIKQIKFMMPSSTGTVVK*
ACM5_101664ACM5_1016642F007756MKQLQTLKRYYINVKFEKYGTYTFEARSKEHAIEMYNDGDYGWSDYSEDFGEFNEVIEDVEEEVFADTQLSLEGVLA*
ACM5_102679ACM5_1026794F025306MPKSILFTEAELETIERAMDDYMCYHDQNTPASDLIGGLPVAERVNDIMIKITEAYANL*
ACM5_102989ACM5_1029892F054422LIGDVSIGEYADTKKVKDAIVLIPAGEGKIGFMPFMPYTKAKDGVNIRKQDIMFEVDPIEDLVEQHRNATSEIALPEKKIIS*
ACM5_103586ACM5_1035862F049702MTLIDFDKKELHDIYSALQYSRLEXXXXXXXXXXXXDRLTKLMDKVAKVRQMCTCKENVSE*
ACM5_103826ACM5_1038261F002185MVKGKLERKYKLIHNGRELSQGFLSEAGKYDAMQILVQRFDEGREGAIDPDEVEIIDMSLKENQ*
ACM5_104145ACM5_1041452F033465MTEFILFTLVFLCIVAMIGENSNPRGMNIFWYKVGVKTREYWKALTEYDSGNNKGNGKHSK*
ACM5_104283ACM5_1042831F105360MVVNAIDFSDLTKKPKPQGFQTPPPQPPQNQQIGVKNPDGTVEPAMGYPVNQMGQGDELLQLFPIPVMICPYPLDYSKELEWIRNCETRKENKGGEAGNYTHYNRQSEDTFVLDKPELAN
ACM5_105782ACM5_1057822F013897MSFTKEQLLALMNTIDFATDNDASYEEYTIIKSGTCDLELIRDILYNEYIHQTQ*
ACM5_105940ACM5_1059402F001293MMRNSLICKLINVQANMKENNEKKIKNEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGK*
ACM5_105940ACM5_1059403F046404MNEKMSKRRIQIRDLQKQEIEEKQETRLLIRLHIFYKILLINL*
ACM5_107283ACM5_1072831F062836EQKRRLLKKEWSHTVYNNMPMQVEEDLRLAQENFRSVRDDVWDNVITPQ
ACM5_107307ACM5_1073073F058431MASEIRANKQTNRAGLGTVTYTDTGIIVSGIVTANSFKGDGSLLTGIDATALKD
ACM5_108180ACM5_1081803F105367KCREVKELPDFIIKDYCCDLVKQIRLQDMLLMASLIKISEAETRNYHLERELKQYRKIQKQGLLGKVRYVLFGNRAKK*
ACM5_108331ACM5_1083311F075400MSILHSSRLKNSAGKKYYFSLDPTFGSSSYSVYSFSDNADYDNKTGTLMYTEPLRKFKKGATDDLVNDNATLIDEYGSIDFLDTVRTQVLNL
ACM5_109458ACM5_1094583F051209CKQKSIQMIFTHTYEDETIFHEAYVTDEKFFNVAIREVTEGGDPLEDFVDYDPFHGASDDQLSEICNDIYDYLLLGSLNA*
ACM5_109677ACM5_1096772F016980MKYKELLNELLLLSKEQLEHETLVMIRDKEKFVSVYSGLFYVTEFDEYDQDLETDQPYFSI*
ACM5_109928ACM5_1099282F077382SHLFLYSVMDENEYKMILGVYQKKTHEMLAQIIALETRVLGLNNVVEQLSTKVTDQENLLIQLRGKKKPKNI
ACM5_110378ACM5_1103782F054941MTDQENHLKQVLTQQKTLVDEINALNSQITSKREMAVKLQGIVEYLDQIGVKLPTEGETETTPETTPEVVEEAPAAEG*
ACM5_111902ACM5_1119022F045808SVKKSVDLVDDEFDLVIRMRTDLEFHDRVPLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLKVFDDFYADGIRHMHDLVIETLRSLQIPHSVLDLKAWMMDRSKIK*
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