NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001813

3300001813: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A



Overview

Basic Information
IMG/M Taxon OID3300001813 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053062 | Gp0055519 | Ga0004664
Sample NameSerpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size105380265
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSerpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → rock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: California, McLaughlin Reserve
CoordinatesLat. (o)38.8739528Long. (o)-122.4391613Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002525Metagenome / Metatranscriptome552Y
F018837Metagenome / Metatranscriptome233Y
F025775Metagenome200Y
F040940Metagenome161Y
F045540Metagenome152Y
F077452Metagenome117Y
F079717Metagenome115Y
F081500Metagenome114Y
F084897Metagenome / Metatranscriptome112Y
F089856Metagenome108Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24123J20310_1000004All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales342075Open in IMG/M
JGI24123J20310_1000083All Organisms → cellular organisms → Bacteria68949Open in IMG/M
JGI24123J20310_1000188All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans47029Open in IMG/M
JGI24123J20310_1001534All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila9019Open in IMG/M
JGI24123J20310_1005186All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3087Open in IMG/M
JGI24123J20310_1013275All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1227Open in IMG/M
JGI24123J20310_1014340All Organisms → cellular organisms → Bacteria1127Open in IMG/M
JGI24123J20310_1014413All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1121Open in IMG/M
JGI24123J20310_1015048All Organisms → cellular organisms → Bacteria1068Open in IMG/M
JGI24123J20310_1030159All Organisms → cellular organisms → Bacteria506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24123J20310_1000004JGI24123J20310_1000004113F045540MSVISMGGNDMSKYIFTLATLLDSKSKIKKHYSPDTVIADLFDENLDEIDFIKSLPELELIYGFEIPADLYDKTDLTLREFADELSQLTIITEELYPEFFDIKFTSLKLTKRWIELENKTDEDSLREMQIINEKFAELDDRLNVVLGNVLIN*
JGI24123J20310_1000083JGI24123J20310_100008357F077452MISITNLNRIKKSVETHLKSGDLELVILPRVEYNALLEKLDDLKDIHDSVEALIEYRSGKRISFDRYDRRRKAKRVQDRPS*
JGI24123J20310_1000188JGI24123J20310_100018825F025775MKQLFTFQGFPMVVVTAMIIWAWISVLSVLIASFF*
JGI24123J20310_1001534JGI24123J20310_10015341F018837TIFDDLHKRYGAASAEQKLVVLRRELLRPIITVETSAHLLQTVGDQICNCLPDEISPEEFKNTITWLNEAARDLHQVLDALTADVSQVQGQHGIK*
JGI24123J20310_1005186JGI24123J20310_10051864F040940MGTLNNIFNLVFGINLILVGVVAFISGIVSLAKRNESVRKLTSITYIIAGVAAVYFGVVLTSSAYNM*
JGI24123J20310_1013275JGI24123J20310_10132751F081500MGSRRKASEAPRGRGVPGSEGVFDQQEKEQEEQKGLIRALTGTLHHFFGGFSPSVCQCH*
JGI24123J20310_1014340JGI24123J20310_10143402F084897MAKSDAFVETSKSRFEVADASEVSLGVGGTFRAEQIGTLGVDSGGSN*
JGI24123J20310_1014413JGI24123J20310_10144133F002525VWAGVDSAWEQEKLEARKMLENAAESHTSGARFVSLLFVYNVLKQ
JGI24123J20310_1015048JGI24123J20310_10150482F089856MRNTALFALPVLAALLLSGCASLGNRTPATGPIPCTYRFKMLTRAEDQARVEAAINAVAVGPVTKSGTVTFPEYRFRVKRLADLDALHPKLLFAKPATAFTPNRQQTVNLKSAGVDVTFDSTDVSASATTTISFNIKPGSRLYYKHPGGVESDITAKVDKNGKVTFPTTIKEGQKHIHARAVKDNVIRYIRVNIFTNEVTDIRKSDY*
JGI24123J20310_1030159JGI24123J20310_10301591F079717MPRGKMVYVSERAHRRLRLLAAQHNRPMGKIVEDLVADEFAEMANPWTGPEGLWLQQQALAEAWDDPALDVHGEA*
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