NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001800

3300001800: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Mar_CSW14AB



Overview

Basic Information
IMG/M Taxon OID3300001800 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053062 | Gp0055497 | Ga0004656
Sample NameSerpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Mar_CSW14AB
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size125432850
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSerpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → rock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: California, McLaughlin Reserve
CoordinatesLat. (o)38.8739528Long. (o)-122.4391613Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006324Metagenome376Y
F007653Metagenome / Metatranscriptome347Y
F012659Metagenome / Metatranscriptome278Y
F069784Metagenome123N
F080069Metagenome / Metatranscriptome115Y
F082505Metagenome / Metatranscriptome113Y
F091422Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24115J20150_1000427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria17026Open in IMG/M
JGI24115J20150_1001229All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium8518Open in IMG/M
JGI24115J20150_1001550All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales7310Open in IMG/M
JGI24115J20150_1002652All Organisms → cellular organisms → Bacteria5117Open in IMG/M
JGI24115J20150_1003765All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4012Open in IMG/M
JGI24115J20150_1004749All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3365Open in IMG/M
JGI24115J20150_1006565All Organisms → cellular organisms → Bacteria → Proteobacteria2627Open in IMG/M
JGI24115J20150_1007926All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2256Open in IMG/M
JGI24115J20150_1008361All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2159Open in IMG/M
JGI24115J20150_1014339All Organisms → cellular organisms → Bacteria1351Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24115J20150_1000427JGI24115J20150_100042720F080069MKPRRTLRALAAIFGCTVALSGVMPAFARAQDDVTGDWLFDTSKFADNDCQISGRITFKPTAVKNTYTCVFESEQICGKLNGNLYIRVRQVCTAQRIGKQVAIKTKVDKILERRPVIPYPEDYYLADNFILQIAPNKAEMNGSHYDEQRQLKARFWR
JGI24115J20150_1001229JGI24115J20150_10012295F007653MKRQIAAGLSILAVVAGVGWKLASHPETSVRLQDVKLIHRSERSNPGPSDALAGIRIRLSPSDFDDQIGAKRGYVPKIAVAAE*
JGI24115J20150_1001550JGI24115J20150_10015503F091422MLMSFDDARTRLQSLGGERLHPKYMSGASEEMMASVRLEHAVSEDDYAAVHALATAELGPGLASLEEIKRVDQLTGASIWVIRRKGEVTGFLAPLALSAAGVKALVDNTFDAANIRAEWVVRVGEPLAGFYCWCYAGKDQVSRGALVLGLRTLIDRHFETLPFFGRDSTEAGARIMAHLGFFPFDSTPHLYWRCCSLMQEIAA*
JGI24115J20150_1002652JGI24115J20150_10026524F012659MGDTDMALLATMQEIRNWVRAAAYPGVRKLLEEALPEAKLRAAYQMLDGTVSLDQVRVACKMSPNVVGALAQRCIAMGLMELTEDKRRVRLFDLNDFGLLGAGDEGQERATNGRQAKQK*
JGI24115J20150_1003765JGI24115J20150_10037654F069784MSKTANRQPLTVRLDPESKKLFAEEAEKCGLEAGVAARQILELYVQRLRESGDYIQTLADFSAALKTRTA*
JGI24115J20150_1004749JGI24115J20150_10047491F080069MKPRRTLRALAAALGCTVALSGVMPAFARAQDDVTGDWLFDTSKFADNDCQISGRITFKPTAVKNTYTCVFESEQICGKLNGNLYIRVRQVCTAQRIGKQVAIKTKVDKILERRPVIPYPEDYYLADNFILQIAPNKAEMNGSHYDEQRQLKARFWR
JGI24115J20150_1006565JGI24115J20150_10065653F082505MWPFADKSKKAVVVLHIDNEGHARGAWFRGNADVLIIDERDPSNRVYRMASETPDDELRRKIGRHPLARTLSDKPTAAPLPTLNLHWPVDGPQTA*
JGI24115J20150_1007717JGI24115J20150_10077171F006324PIIALRMVAAPPSGCGTSDFNGDGDFGTDQDIEAFFACLAGSCCATCFEGGSDFNGDGDFGTDQDIESFFRVLGGGDC*
JGI24115J20150_1007926JGI24115J20150_10079264F069784MSKTANRQPLTVRLDPESKKLFSEEAEKCGLEAGVAARQILELYVQRLRESGDYIQTLADFSAALKTRTA*
JGI24115J20150_1008361JGI24115J20150_10083611F082505MWPFADKSKKAVVVLHIDSDGHARGAWFRGNADVLIIDERDPSNRVYRMASETPDDELRRKIGRHPLARTLSDKPTAAPLPTLNLHWPVDGPQTA*
JGI24115J20150_1014339JGI24115J20150_10143392F006324DCGTADFNGDSDFGTDADIESFFACLAGACCPTCYPGGADFNADGDTGTDADIESFFRVLAGGAC*
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