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Sample 3300001798
3300001798: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Ca
Overview
Basic Information
IMG/M Taxon OID 3300001798 Open in IMG/M GOLD Reference Gs0053062 | Gp0055522 | Ga0004667 Sample Name Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Ca Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 108343839 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria 1 All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy) Type Environmental Taxonomy Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
Location Information
Location USA: California, McLaughlin Reserve Coordinates Lat. (o ) 38.8739528 Long. (o ) -122.4391613 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F025322 Metagenome / Metatranscriptome 202 Y F046955 Metagenome / Metatranscriptome 150 Y F054174 Metagenome / Metatranscriptome 140 Y F057919 Metagenome / Metatranscriptome 135 Y
Sequences
Scaffold ID Protein ID Family Sequence
JGI24126J20157_1000911 JGI24126J20157_10009114 F025322 MFDDVEGLDGEMKNIVALIDQVRGKLGDRFLRLELADHLAPKSTPFRVPSGLGAAIDKRIAPAGMDALNLFRAIRDVNKDVPDNPDKLDALVAAMGKLKQSLIPLTAEVAIQVGFK* JGI24126J20157_1002250 JGI24126J20157_10022502 F046955 MAAPRQMTANTLNALKGWPQPAAVDYHTEFDPSITDVVLPGSVVHLNSDGFYELGVGAEPVMPLFMFNGSDDPDVRNEGGDPATEKGVWIPINPTGQAMALVAVGAYELVSTAFDKTGTYNPNDPLTSPLSGGNAGKLIVGTLYTHMIVGFVSRGVVDNGYGHDGLAFWPFPVFPTP* JGI24126J20157_1005101 JGI24126J20157_10051015 F054174 MAWTDLISGCFGFGTAPFATNRPDEDSAKEAISAAQAEGATKAEFAQVIAMYPRKYIKSDQLLRERIREDAGRLDRLWKVSPVN* JGI24126J20157_1024155 JGI24126J20157_10241551 F057919 MLLSVSFHDISSLFGFFTFLIIANQLISGTMLAFSLVPEPMLIPVVRDEEDIEDLYTDDFF*
