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Sample 3300001784
3300001784: Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4
Overview
| Basic Information |
| IMG/M Taxon OID | 3300001784 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0046201 | Gp0055637 | Ga0002192 |
| Sample Name | Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 292865821 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Lawrence Berkeley National Laboratory, California, USA |
| Coordinates | Lat. (o) | 37.8754404 | Long. (o) | -122.2477251 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F010231 | Metagenome | 306 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| JGI20225J20221_1000033 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 665092 | Open in IMG/M |
