NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300001760

3300001760: Wastewater microbial communities from Belvaux, Luxembourg - M40



Overview

Basic Information
IMG/M Taxon OID3300001760 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099419 | Gp0055293 | Ga0012994
Sample NameWastewater microbial communities from Belvaux, Luxembourg - M40
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31943412
Sequencing Scaffolds10
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA1041
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Microbial Communities From Belvaux, Luxembourg
TypeEngineered
TaxonomyEngineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Belvaux, Luxembourg

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationBelvaux, Luxembourg
CoordinatesLat. (o)49.506095Long. (o)5.943536Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015738Metagenome / Metatranscriptome252Y
F021262Metagenome / Metatranscriptome219N
F025938Metagenome / Metatranscriptome199Y
F033819Metagenome / Metatranscriptome176Y
F033857Metagenome / Metatranscriptome176Y
F037272Metagenome / Metatranscriptome168Y
F041512Metagenome / Metatranscriptome160N
F043669Metagenome / Metatranscriptome156N
F045118Metagenome / Metatranscriptome153N
F045124Metagenome / Metatranscriptome153Y
F058179Metagenome / Metatranscriptome135Y
F058560Metagenome / Metatranscriptome135Y
F088842Metagenome / Metatranscriptome109N
F105193Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
CSTRM40_1000451All Organisms → cellular organisms → Bacteria2548Open in IMG/M
CSTRM40_1000479All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2188Open in IMG/M
CSTRM40_1000994All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon7447Open in IMG/M
CSTRM40_1001793All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia3180Open in IMG/M
CSTRM40_1003817All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.2720Open in IMG/M
CSTRM40_1004691All Organisms → cellular organisms → Bacteria2723Open in IMG/M
CSTRM40_1006488Not Available2823Open in IMG/M
CSTRM40_1007120Not Available1591Open in IMG/M
CSTRM40_1007678All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA1041692Open in IMG/M
CSTRM40_1008948All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
CSTRM40_1000451CSTRM40_10004516F045118NSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRSLYGFTRVSELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKVFQERFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTRM40_1000479CSTRM40_10004795F015738VPESDRPPAVMWSRVDTGLYQELEDAIREVFPGESDRVRLAAVEVWGVVMNRVPESGRVEGASWCRHFDRPIDHRLVKEDRPACIEERHGCGNCPESTYRVRRVPDR*
CSTRM40_1000994CSTRM40_10009942F037272MTGKQIMRIHTANGVEEIDADRLIVEGDEYVLFQGEEEVRRVPIADILSETDPETGEEAGGIETIYSRS*
CSTRM40_1001793CSTRM40_10017932F033857MVEIIDLSTVSPAPVIVRIGNGDEIEEIDLTIVPARGTLLLSEATQRHGGWDKIPDDEMIPAIAAICRQSNPRITAEWLETKLTRPQLAGLTQVILAQAFRPWGNQKKDDKEQDAGEKNR
CSTRM40_1001793CSTRM40_10017936F045124MSDDSTLRAMIYETRQDVRWIKDTLKEIKESNQARDELIAEIKARQDQQIGRDSALAVVISAIVAFFTALASGGWFR*
CSTRM40_1003817CSTRM40_10038174F058179MIGTEDLALLVWLTFIAVGVVCIYTILADAATLSMTGTCTGQGFTNITVEADLLLVSINQTANGTTWQIWGAPA*
CSTRM40_1004522CSTRM40_10045222F105193MTAFTLSLDYDYPTALLEPDGDGQPRQINLVIDWRDAVISAETRAHDDNTQSEYRWRGMEDAYPLPPLVDATRLREWVEEEVLPRALPLLEAYETVWEDIEQFGRFPGHEDEKQDFDAWMDRIEPPLHDGGLWPVVDWLSGGVEEVGPGTTDAAIEELADTIVDEAAAENVVLVGGREAVRAYLLDYRQDLQDAIPEPDRYEIRGYEVVEKVAKPSGTTARVWVPKSWE
CSTRM40_1004691CSTRM40_10046911F033819SRVTNTAIQSQLIELSVRLTRMEKDIQEIKNNLSESGEKVSSLEKSEAGRYPLIERRLDNLEKRTDKHGNEIDELIKITQSLANTNKVLTWVAGLAGAGVLSWLIAQILSLIG*
CSTRM40_1004691CSTRM40_10046914F021262MSKKYYIKFNTGKELTGTAKEIATQLRNESRLLAITPRKYAKLVAKSYEMSTGMKLRTWTYNSFVKSLGKSLMVMEFKEMK*
CSTRM40_1006488CSTRM40_10064885F041512MEKDYRLIRDLDAYVRLRTKKDTAITLKLKDKIAQMNSDELHIAEVYYHQLLASDIRTLGEIGCIELAIELATWLYPRILREAYAERSKDYMLAH*
CSTRM40_1007120CSTRM40_10071202F043669MDKLALQSLISKMSIATGEEYHLTESDKLAILSAFHKCEKWLIALQGEGVISVSEQDLEYLRDLADNVEGDINGKWSLDKPEYLAILITLQDYLNDIPCN*
CSTRM40_1007678CSTRM40_10076781F058560MGKSDVRCPKCGKATNEVELIYPRTDDYEEKRVRAIICPHCLYVFSEPDDKKTNNSFRNEKQDIIKSD*
CSTRM40_1007678CSTRM40_10076782F025938MVVIPDKIVDLLSAMFEDVRDKQFIIGDTLIEIVNATGDKGGTIAYLAGRLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRALLDRCIDEQWSSATFKENKYPALKDPRVIVGRMIALGKRIYEQDTLEIEQREAILLAIRILQEIVHALENPEYLDVKF*
CSTRM40_1008948CSTRM40_10089483F088842MKNDEGIAYGLIAVVMFIGMVALIFICFTPAMNGVIGAANDLIGDGKVGVQTAGAVEWGLGWFGAIPLIALLGIGYWAYIRALEESPSD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.