NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001715

3300001715: Marine viral communities from the Pacific Ocean - LP-41



Overview

Basic Information
IMG/M Taxon OID3300001715 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067852 | Gp0056796 | Ga0006064
Sample NameMarine viral communities from the Pacific Ocean - LP-41
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size66324520
Sequencing Scaffolds19
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)49.9984Long. (o)-144.9944Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000567Metagenome / Metatranscriptome1020Y
F001821Metagenome / Metatranscriptome630Y
F002274Metagenome / Metatranscriptome576Y
F002811Metagenome / Metatranscriptome528Y
F004463Metagenome437Y
F005314Metagenome405Y
F006550Metagenome / Metatranscriptome370N
F007802Metagenome / Metatranscriptome344Y
F012782Metagenome / Metatranscriptome277Y
F015222Metagenome / Metatranscriptome256Y
F023876Metagenome208Y
F031129Metagenome183Y
F031260Metagenome / Metatranscriptome183Y
F043344Metagenome / Metatranscriptome156Y
F053568Metagenome / Metatranscriptome141N
F070214Metagenome123Y
F081756Metagenome / Metatranscriptome114Y
F082810Metagenome113Y
F085809Metagenome111Y
F101856Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24517J20059_1002853All Organisms → cellular organisms → Bacteria2657Open in IMG/M
JGI24517J20059_1003521All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2075Open in IMG/M
JGI24517J20059_1004224All Organisms → cellular organisms → Bacteria1693Open in IMG/M
JGI24517J20059_1004393All Organisms → cellular organisms → Bacteria1613Open in IMG/M
JGI24517J20059_1005113Not Available1344Open in IMG/M
JGI24517J20059_1005831Not Available1163Open in IMG/M
JGI24517J20059_1006686Not Available1002Open in IMG/M
JGI24517J20059_1007956Not Available838Open in IMG/M
JGI24517J20059_1008748Not Available770Open in IMG/M
JGI24517J20059_1009032All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium749Open in IMG/M
JGI24517J20059_1009192All Organisms → cellular organisms → Bacteria737Open in IMG/M
JGI24517J20059_1010991Not Available632Open in IMG/M
JGI24517J20059_1011395Not Available616Open in IMG/M
JGI24517J20059_1011595All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium607Open in IMG/M
JGI24517J20059_1014008All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium531Open in IMG/M
JGI24517J20059_1014061Not Available529Open in IMG/M
JGI24517J20059_1014124All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.527Open in IMG/M
JGI24517J20059_1014301Not Available523Open in IMG/M
JGI24517J20059_1015287All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24517J20059_1002853JGI24517J20059_10028531F082810LPSNINPETGLTYIDDALLSNEEKAMRLRQKGMTA*
JGI24517J20059_1003521JGI24517J20059_10035211F007802SQTTLAPWTITDPGGTAYMLAQYPQGWLRMGDASPVAADVAIAASEDVFQYHSQKAWYFETSIAVTDVTELNTFVGFAANAYANPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYTDYVQTVQQR*
JGI24517J20059_1004224JGI24517J20059_10042241F012782MTTHFSSGVTNVPGKAQATSLFSGIKQPLITGGDAQEVAYQNDFVTYNASDWDVTSSGSAYQLADYAGGWLRLGDNVPAHTETIGVSGKEVWNYNANKKWWYETRIAITDVSDYNFFVGF
JGI24517J20059_1004393JGI24517J20059_10043932F000567MKESLLKLTEKITTWHVKLFEYLTLKSKTSVLFTWLLIFICLYEIFEHIVIPIFLIWWGLS*
JGI24517J20059_1005113JGI24517J20059_10051132F085809MTISWNTGAAAMRFRHNLKLKKKNKKKNKSTSPQAGGPAHKESGFKPSSLTVDKL*
JGI24517J20059_1005831JGI24517J20059_10058311F006550DYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRANFTAEKFGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSYDVINVVETNTAQAAIAAWDTFVSSTTQSTGDPTIDIGIASLNIEGTGVGGKLNRVGMHQLTYAKFTGNTFLRGVASIGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRVITGAITPLAWS*
JGI24517J20059_1006686JGI24517J20059_10066864F070214MRYIKLILLLMILIPTISLTEETTTNNLISQDFSTGWSGTATQRHSNSTVAAVNNTYIKSDDVSLKDDANLTEAQLQDGFTTNHSFKYWHWNNYNSTVTS
JGI24517J20059_1007956JGI24517J20059_10079565F031129SKAIFDVPLSLSKTIEYLVEKEIKKVKKSKPNGQGN*
JGI24517J20059_1008748JGI24517J20059_10087481F004463MNNKTIKSVNNRILKTMMADEKELKVLLNTETTSIPDQQLDGLFVKIEQLLGRLMVNQNKIMLLQSVGEEDGNRKK*
JGI24517J20059_1009032JGI24517J20059_10090321F053568GQTFKIKYTKLDGEEVTRNAKFILGKCGEYISKAGNKLFTYFDVDQSNHMGGDQYRSARDSWEIK*
JGI24517J20059_1009192JGI24517J20059_10091922F101856MTTNVEKRIVLASADPLSHMELELTSAIQDAYDKAVKEGFSGTITDWIKTAPIDEVKRIDLGGGGPVKNRPKEPKGVKKLNIADYFTIGRTVASLNPMEREVV
JGI24517J20059_1010991JGI24517J20059_10109912F015222MQTLLRRKMTERFCKKCNKMCHCTQAGTENECTNCECNGREEDSTYEGGGVIIDDTGECESCQ*
JGI24517J20059_1011395JGI24517J20059_10113954F005314MVKPIDITNRVIVPKPQPNLEKPKSFFIGRAPMDGAEEEGIEVEANPRDEIKQPHLDNSVVQD
JGI24517J20059_1011595JGI24517J20059_10115951F002811YNASNWQTVTSTGASDYQLADYAFGWLRQGDGAPAAGEIQGVADYECWQYSSTRPWYFETKIALTDVGEGNIWVGFAQNGYADSDTLPTDGIGFSHLQDTTTIQFVSRKNGAGVSFDMLEAGSTYTFEDSSIATQSATVLAQPSNPVRLGFLFQPLGSETGQTAIQYKLFLNGNIVGTQAATTVPDDLEIGINAMIAHKGTV
JGI24517J20059_1014008JGI24517J20059_10140082F002274MAKTEVGYPEGGKKYKGPTDNVGQDPRANIVTNAFVPGQKIDKGTKVTVQGTGAMLKSKNKTATWF*
JGI24517J20059_1014061JGI24517J20059_10140611F031260MDDRIEQFDTWFVNAKSGDKYTYFTGNLAYSTCLADGLPLKQLRNHILNKCCKWDLSTLPKKASTNKILFKPQIRLVQKAKKKYWGKRVKDVLRDSDYIAVRL*
JGI24517J20059_1014124JGI24517J20059_10141242F043344NMGDRVSVSFRQKNDWYVNKVKEEHTDESPALFHHWGGTQFPKMAFDWFKSVKKKYGKGGGDPFTRMEPRNLMVQLIAHLRNHADLRYSTLNTSKKESDWDIDPELICYSIYLGKDGSDGDNSDNGHYTIDVDTGKMYDDKEQSIG*
JGI24517J20059_1014301JGI24517J20059_10143012F001821MQTNKKPNIALEAFDMAKTIQDVSRGGSLYGKLFAIKDMQIHLLQEENKIKEQIESEESK*VE*
JGI24517J20059_1015287JGI24517J20059_10152871F023876CYEGVHKKHGYAYKRYVDLDAMEEIDNGKTQYRCASVKWTISNERTLT*
JGI24517J20059_1015287JGI24517J20059_10152872F081756MIDYNLILYIGLFLMAFGFILFMISEMEDRRKDRELFHQQQLTKSFERNKQ*
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