NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001714

3300001714: Marine viral communities from the Pacific Ocean - LP-39



Overview

Basic Information
IMG/M Taxon OID3300001714 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067852 | Gp0056795 | Ga0006063
Sample NameMarine viral communities from the Pacific Ocean - LP-39
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size38936985
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
unclassified Hyphomonas → Hyphomonas sp.2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9958Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000567Metagenome / Metatranscriptome1020Y
F000937Metagenome828Y
F001536Metagenome675Y
F005861Metagenome388Y
F007824Metagenome344Y
F008888Metagenome / Metatranscriptome326Y
F032440Metagenome180Y
F033218Metagenome / Metatranscriptome178Y
F036423Metagenome / Metatranscriptome170N
F037257Metagenome / Metatranscriptome168Y
F070306Metagenome / Metatranscriptome123Y
F075320Metagenome119N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24516J20058_1004668Not Available1035Open in IMG/M
JGI24516J20058_1005255Not Available879Open in IMG/M
JGI24516J20058_1005420unclassified Hyphomonas → Hyphomonas sp.839Open in IMG/M
JGI24516J20058_1006262Not Available690Open in IMG/M
JGI24516J20058_1006284All Organisms → cellular organisms → Bacteria686Open in IMG/M
JGI24516J20058_1006570unclassified Hyphomonas → Hyphomonas sp.650Open in IMG/M
JGI24516J20058_1006802All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium623Open in IMG/M
JGI24516J20058_1007113Not Available594Open in IMG/M
JGI24516J20058_1007119Not Available593Open in IMG/M
JGI24516J20058_1007224Not Available584Open in IMG/M
JGI24516J20058_1007377All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.570Open in IMG/M
JGI24516J20058_1007565Not Available553Open in IMG/M
JGI24516J20058_1007952Not Available526Open in IMG/M
JGI24516J20058_1008326Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24516J20058_1004668JGI24516J20058_10046683F001536IKSLIEKIFGKFCKCEEPIILEDEEKYLAEEKALADHAESFKEIIEPEKIQCNTHSRFKKSCPLCVEAAK*
JGI24516J20058_1005255JGI24516J20058_10052552F007824VYKLNSVENSGSFTWHGYRVSLLRKVDNASIYQMAKDFHTSLKASSAKAETKEESNY*
JGI24516J20058_1005420JGI24516J20058_10054203F005861LKTNLRRIARRKRKNRTDTLIQYLIIGLVLALVLLVGCENGARHSLELTEPTDHTAGDDGGKMKYKIIWGSTKHND*
JGI24516J20058_1006262JGI24516J20058_10062621F036423TVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLPDDLGLAIMIGTKNNTTQGATIWVDYVKMISSRSFGSSTTK*
JGI24516J20058_1006284JGI24516J20058_10062841F008888MAHEKQAPLGKSVKIKIPSQNLIVDPRGKSSIRGRSARIPTGDKVTVKGTGAARKQTATWF*
JGI24516J20058_1006570JGI24516J20058_10065702F005861MKYRTLKLLRRRKNARKRNQTTEKGVQALVIGLALVLLLLVGCNGIKHVIEITEPLDHTTGDDGGKLKYKIIFGDKSQKE*
JGI24516J20058_1006802JGI24516J20058_10068022F033218MAQPKTKKVICPRCTGNGYFKVKESVERQVDKVVQCPMCNSQGEIDEEKADTIYVDSDGLHXVH*
JGI24516J20058_1007113JGI24516J20058_10071131F037257ASTAQLQTIAAELKIMANSWEKFGPRIAINGQAVEPPALRMTPTEAINKRPRKRHKLAMFL*
JGI24516J20058_1007119JGI24516J20058_10071191F000567KESLLKLTQKITTWHEGMFKYITLKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGLS
JGI24516J20058_1007224JGI24516J20058_10072241F070306LTCRVLGRSKLPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
JGI24516J20058_1007377JGI24516J20058_10073773F032440MANIYKNIQAKITSAGSYDDMYTAPDETTSIVKSIKLYNTHGSNLVVDIKVYDLSSTTDFEYDTVTVTASGSVDLLTFNN
JGI24516J20058_1007565JGI24516J20058_10075652F000937MVKEIVLIILLINGELGLPSFPFEGTVHECFEYGDKMRVELATYNEERNAWFLNDGSGTWQGFICG*
JGI24516J20058_1007952JGI24516J20058_10079521F001536MIKWIKSLIEKVFGKFCKCEEPIILEKKIKPQAVKEIITAEPEKIQCNTHSRFKKS
JGI24516J20058_1008326JGI24516J20058_10083261F075320ETNLHFESTGMTVDDIDKAMRIASVELWDGQRPEVLVYDYLELXRGGGAGDAASVQAKIESFKQLVSDWRVVGVILHQSGRGSGNRGRAGGIEAGRYASTSESHFLIETWRRWDDTQLDEADRKHYETEISAGLWKNKSGDGEKAEVHLTIDKSGRLLEPGIVWEQI
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