NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001650

3300001650: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046



Overview

Basic Information
IMG/M Taxon OID3300001650 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085736 | Gp0057371 | Ga0003885
Sample NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4676090
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)N/ADepth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005285Metagenome / Metatranscriptome406Y
F015539Metagenome / Metatranscriptome254Y
F018438Metagenome / Metatranscriptome235Y
F022237Metagenome / Metatranscriptome215Y
F023941Metagenome / Metatranscriptome208Y
F029530Metagenome / Metatranscriptome188Y
F035094Metagenome / Metatranscriptome173Y
F037452Metagenome / Metatranscriptome168Y
F043634Metagenome / Metatranscriptome156Y
F053913Metagenome / Metatranscriptome140Y
F057773Metagenome / Metatranscriptome136Y
F070443Metagenome / Metatranscriptome123N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20280J16326_100070All Organisms → cellular organisms → Bacteria1821Open in IMG/M
JGI20280J16326_100287All Organisms → cellular organisms → Bacteria1103Open in IMG/M
JGI20280J16326_100326All Organisms → cellular organisms → Bacteria1042Open in IMG/M
JGI20280J16326_100618All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha693Open in IMG/M
JGI20280J16326_100621All Organisms → cellular organisms → Bacteria691Open in IMG/M
JGI20280J16326_100703All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis641Open in IMG/M
JGI20280J16326_100806All Organisms → cellular organisms → Bacteria596Open in IMG/M
JGI20280J16326_100831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium586Open in IMG/M
JGI20280J16326_100955All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans543Open in IMG/M
JGI20280J16326_101038Not Available518Open in IMG/M
JGI20280J16326_101047Not Available515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20280J16326_100070JGI20280J16326_1000701F023941AGFEPVWGFSCQVVIFGLLPVLCSELEKPFFVPSPAIRFAERAEGVKGPKR*
JGI20280J16326_100287JGI20280J16326_1002871F070443MIGLEGATCNTALIPEMEEIGANILLAEHIGRALVVGREPADRLDVDVPGPLGKAGKPHVVDHTLTQRGHGRSPFGFKRQDLCPGTDQIPQHAVLNDYAFYGEAVQSNR*
JGI20280J16326_100326JGI20280J16326_1003262F035094PRGPAVEKLFHETLKRLTENELIDFSRLWHDGCVKAIIEAQDVDRNHSAKV*
JGI20280J16326_100605JGI20280J16326_1006051F057773IVADDVPPRVGGGAVEQGAEKSREVLLAAGIADHAFDLTGGDVEGSDQSLSAVTAVFELVPFDLTGHHGLVRRNAFQGLDASLLVDGDDAMGLVGSRRSLVDCTDIGALGIEGGIGLRGQPVPEAMRFEVSLFFKKRPTERCEMFGTRPRRIASSAISRWLQWLMGRSLASGFSHVIATIAQTCSGVYDAGAPGRGASTSRSGTDTPSAAIRHRLRQRRTVFGHTSSSSALSR
JGI20280J16326_100618JGI20280J16326_1006181F018438MGIDDESSHPALCSEVADGVTRFLIYLGGVCLFREPDAGNLPVRFDEREQETGSSQTGLRRAMRKHPNSHREAK
JGI20280J16326_100621JGI20280J16326_1006212F005285VSVGEGMHGVGGDRMAGSWSDMNQGSLFGKGTAFMTDERSEEPCPKGDRAFVRAKKRGNARGAKGGRKVEA*
JGI20280J16326_100703JGI20280J16326_1007031F022237GRPILAETADRLVWAALQWRLSIVLLTIVVSPRRSDLRLLAIDDADARVCSRWFSVYLAVAPFNFFVVWLVERLGFGHEAVFGAATLVGLVITLYKIEMFWATRRPIARAILAATGGEPGPVRRAVAASWHWFFIALSLGIFFGSGIELALGKGAWVARAATATQGIFVALAVVGQASHNLIGRLCAGDAADIRVALRRTRFRRALSRLADTF
JGI20280J16326_100806JGI20280J16326_1008061F029530MMKSRLDCSHRQXLSRRRALELAGGAAVFTFWQPKAHTLPAPQQYVDRLAVERIADHEAPRPPILIDAQTHVWWRAGGIRQMSERGEHFLKXLAGSRASVVGRPVPVADMGRVMFIEDVFLGSETDIAFLNSFGMRAAFDGVDLFPPREAAFIRSMAPSRI
JGI20280J16326_100831JGI20280J16326_1008311F053913KAVSCCATTLALMAAIGLSPAMGQGPKPSGGRTWPGIAQPVKHDADPAHSANPSFQGASPQGTSQRGFVVMPFDPEAAKIKPHYEWQYHYTGRHAHWEGHWTLVTAPIQSAKPPTTPAP*
JGI20280J16326_100955JGI20280J16326_1009552F015539VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAIAAVFHEEGRRGNDRALAQSQN
JGI20280J16326_101038JGI20280J16326_1010381F037452MGSSILSEVDDTSILRTGLSTCYWRPLGRLPASRLRPPRSGLERSDFVLWPLATDRIFM
JGI20280J16326_101047JGI20280J16326_1010471F043634RFFLRYLLPADWQTASARNDRERSNRTRQNAEDLFKPKPQTTRADVPNDDSSAEYQPRRQPRIFAIPPVVPMSTTKVEPAAEPKQIRRKAIDKRGTREIPLSQFGRVRTLTSYGMTPAQVAELYGVAVGEIDRIIRRLR*
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