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Sample 3300001644
3300001644: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045
Overview
Basic Information
IMG/M Taxon OID 3300001644 Open in IMG/M GOLD Reference Gs0085736 | Gp0057370 | Ga0003884 Sample Name Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 6868805 Sequencing Scaffolds 4 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 2 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium 1 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies Type Environmental Taxonomy Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Alternative Ecosystem Assignments
Environment Ontology (ENVO) forest biome → land → forest soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location Harvard Forest LTER, Petersham, MA, USA Coordinates Lat. (o ) 42.550409 Long. (o ) -72.180244 Alt. (m) N/A Depth (m) 0 to .1 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F004356 Metagenome / Metatranscriptome 442 Y F004500 Metagenome / Metatranscriptome 435 Y F046177 Metagenome / Metatranscriptome 151 Y F049144 Metagenome / Metatranscriptome 147 N F059191 Metagenome / Metatranscriptome 134 Y
Sequences
Scaffold ID Protein ID Family Sequence
JGI20279J16325_100458 JGI20279J16325_1004581 F004356 MSKKKDRAWFVCPQWADMMARHYANDAEAGQALKADPKVLAKLRSRTPVPKSALLKMLHRLAERHDLGAAIGDLVVDTRSR* JGI20279J16325_100543 JGI20279J16325_1005431 F059191 IASESYTVVFYVPWMARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR* JGI20279J16325_100543 JGI20279J16325_1005432 F046177 PQPDVLAGPESWQSQPPRRSRSWDSGSAADTFEDAIGEAVLGAATKAIGRVIGRKMRQAYNERIAPAMAARQEAVLNERVAIAQRHPDLRACLNDQVVFLVGGTRVLPLASAMQVRTVEQSDALVAQLRG* JGI20279J16325_100602 JGI20279J16325_1006021 F004500 TEPWRARLGAFCPRSTFPGTSVPGAGGGTGPAVVVQSVPRVRDKAVLAIPAPQSALAAQLGQMNNYNHMTSAYAFGEGASGPPPYREPV* JGI20279J16325_100626 JGI20279J16325_1006261 F049144 MRVLHLIRRIGALNRGNIITPRQIESACSARLAHTGHNRHSNDMTKPDLALSQIAARFTRHDVEWSRGAFMIIDRRTANPIARLRPIPDTDRFELFYWSNVKRRWTTFGNLGRMKLMLESAHEIVESDPMFRIPRGR*
