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Sample 3300001629
3300001629: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF006
Overview
Basic Information
IMG/M Taxon OID 3300001629 Open in IMG/M GOLD Reference Gs0085736 | Gp0057257 | Ga0003845 Sample Name Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF006 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 1913971 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 1 All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811 1 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies Type Environmental Taxonomy Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Alternative Ecosystem Assignments
Environment Ontology (ENVO) forest biome → land → forest soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location Harvard Forest LTER, Petersham, MA, USA Coordinates Lat. (o ) 42.532967 Long. (o ) -72.209488 Alt. (m) N/A Depth (m) 0 to .1 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F005285 Metagenome / Metatranscriptome 406 Y F015539 Metagenome / Metatranscriptome 254 Y F038357 Metagenome / Metatranscriptome 166 Y F086219 Metagenome / Metatranscriptome 111 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link JGI20240J16301_10203 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 958 Open in IMG/M JGI20240J16301_10205 All Organisms → cellular organisms → Bacteria 943 Open in IMG/M JGI20240J16301_10450 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811 593 Open in IMG/M JGI20240J16301_10483 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans 567 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
JGI20240J16301_10203 JGI20240J16301_102031 F038357 MGVSAPLPHQGRAGLQHSAGIERTSASLELARQNPQAALQGAGWTALGALLQLIGEASDDQIATEAQRRSGVMQCPPRTPQLLCRPIDQSGNLAGFKLGQVPVSKSVVPDVDWTETGGRLARVLASRSVVEWRFHRFAGSAMRYTRPRSSLAEASVSPSFFFRVPEKTPRTV* JGI20240J16301_10205 JGI20240J16301_102051 F005285 ATSSSGETVSVGEGMHGVGGDRMAGSWSDMNQGSLFGKGTAFMIDERSEEPCPKGDRAFVRAKKRGNARGAKGGRKVEA* JGI20240J16301_10450 JGI20240J16301_104503 F086219 MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPAN JGI20240J16301_10483 JGI20240J16301_104831 F015539 VVQLQFLDLMIPKECGAVPMDAATRADLIDLMARVLVVVFHEEGGSVNDRRFVQCQDQTGAPGSEGD
