| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001618 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085736 | Gp0057311 | Ga0003869 |
| Sample Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF030 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1434058 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → solid layer → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Harvard Forest LTER, Petersham, MA, USA | |||||||
| Coordinates | Lat. (o) | 42.471116 | Long. (o) | -72.209488 | Alt. (m) | N/A | Depth (m) | 0 to .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009040 | Metagenome / Metatranscriptome | 324 | Y |
| F041178 | Metagenome / Metatranscriptome | 160 | N |
| F050559 | Metagenome / Metatranscriptome | 145 | Y |
| F055082 | Metagenome / Metatranscriptome | 139 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI20264J16347_10005 | All Organisms → cellular organisms → Bacteria | 2773 | Open in IMG/M |
| JGI20264J16347_10039 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1666 | Open in IMG/M |
| JGI20264J16347_10161 | Not Available | 1063 | Open in IMG/M |
| JGI20264J16347_10219 | Not Available | 868 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI20264J16347_10005 | JGI20264J16347_100052 | F055082 | MDPAGRRLKIPVWMLLPECTEIKISQRPHLGKEALLSLASLIASQLASKDRVHDNLLQTPVSGCEGGRRGATSTSGPDDPKGMRCRANGRSDTRRSDRSHGPRSGSGLSRGGGKSQ* |
| JGI20264J16347_10039 | JGI20264J16347_100392 | F041178 | VNAEQASHDEGLVKGSHHGDIERSPVASVSKVQAHLRDAARFRARSTSHAVAAHSSCTKIPLSAGRAQEDENHSRKRHFRPWLATVRLPGSARTDQVLEDDGITLVYSLGNLHRDALDNDPGGHVFPERDQ* |
| JGI20264J16347_10161 | JGI20264J16347_101612 | F009040 | LRVRQSGADLKPPQAASVKSRGWERCGNAGTMIPAGMVERGERKQTVDEVSKAD* |
| JGI20264J16347_10219 | JGI20264J16347_102192 | F050559 | KNLGLLGDRKIVPAVDHRFALSNPALVSAPSKKLISAVRAPCGVETEGR* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |