NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001613

3300001613: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029



Overview

Basic Information
IMG/M Taxon OID3300001613 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0085736 | Gp0057310 | Ga0003868
Sample NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2219984
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomesolid layerforest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.471116Long. (o)-72.17263Alt. (m)N/ADepth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002725Metagenome / Metatranscriptome534Y
F016866Metagenome / Metatranscriptome244Y
F028557Metagenome / Metatranscriptome191Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20263J16346_10030Not Available954Open in IMG/M
JGI20263J16346_10155Not Available560Open in IMG/M
JGI20263J16346_10214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria521Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20263J16346_10030JGI20263J16346_100301F028557MTLISYPGSDHQVAQFSIDAGHARDIILMLTDAHALVEDLASGHAPAAARQARAVLRDADSGYDLDSLAGALSDVISWLHQARGHALAGIPPLT*
JGI20263J16346_10155JGI20263J16346_101551F016866MTFMSTTGQAPVPPAEPRGPLGPPLMTPGRWVALAVGVPVALALIGWTGFNLVTTVARGSYPFSYAIPVQDGQVAVNINAGDVTLQEAPGSSTARLTGTVQYGLIRPGISESNTPTGANIGMNCNGINTNCEMSASLDVPARTAVTLWSNGGNIT
JGI20263J16346_10214JGI20263J16346_102141F002725LPVLRLRSSFVAPLCGHYDEPVTTSSVRPVVLRNGVGIEDPLSVVLDFLQAYGRLDISGPAQPAAFGEPDLRLANRGGARISAAEIAAVLQRRGAIEGALRAIAPDVSLAGAADSVPWLVLG

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