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Sample 3300001611
3300001611: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023
Overview
Basic Information
IMG/M Taxon OID 3300001611 Open in IMG/M GOLD Reference Gs0085736 | Gp0057304 | Ga0003862 Sample Name Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 319045 Sequencing Scaffolds 1 Novel Protein Genes 1 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies Type Environmental Taxonomy Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Alternative Ecosystem Assignments
Environment Ontology (ENVO) forest biome → solid layer → forest soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location Harvard Forest LTER, Petersham, MA, USA Coordinates Lat. (o ) 42.471116 Long. (o ) -72.17263 Alt. (m) N/A Depth (m) 0 to .1 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F031579 Metagenome / Metatranscriptome 182 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link JGI20257J16338_10006 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis 1979 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
JGI20257J16338_10006 JGI20257J16338_100062 F031579 MIIDRRTANPIARLRPIPDTDRFELFYWSNVKRRWTTFGNLGRMKLMLESAHEIVESDPMFRIPRGR*
