Sample 3300001324

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300001324

3300001324: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-35cm)- 6 month illumina

Overview

Basic Information
IMG/M Taxon OID	3300001324 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0083722 \| Gp0055465 \| Ga0011777
Sample Name	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-35cm)- 6 month illumina
Sequencing Status	Permanent Draft
Sequencing Center	University of Tennessee
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	20408415
Sequencing Scaffolds	19
Novel Protein Genes	19
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → active permafrost layer → permafrost
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Axel Heiberg Island, Nunavut, Canada
Coordinates	Lat. (^o)	79.26	Long. (^o)	-90.46	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002431	Metagenome / Metatranscriptome	560	Y
F003763	Metagenome / Metatranscriptome	470	Y
F004019	Metagenome / Metatranscriptome	457	Y
F013176	Metagenome / Metatranscriptome	273	Y
F014078	Metagenome / Metatranscriptome	266	Y
F015243	Metagenome / Metatranscriptome	256	Y
F019295	Metagenome / Metatranscriptome	230	N
F021632	Metagenome	218	Y
F021888	Metagenome / Metatranscriptome	217	Y
F028362	Metagenome / Metatranscriptome	192	Y
F028875	Metagenome / Metatranscriptome	190	Y
F030266	Metagenome	186	Y
F030923	Metagenome / Metatranscriptome	184	N
F051312	Metagenome / Metatranscriptome	144	Y
F055264	Metagenome / Metatranscriptome	139	Y
F057774	Metagenome / Metatranscriptome	136	Y
F077732	Metagenome	117	N
F079923	Metagenome	115	N
F083420	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
A2635W6_102152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	614	Open in IMG/M
A2635W6_104518	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
A2635W6_108741	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
A2635W6_109101	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1286	Open in IMG/M
A2635W6_111340	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	908	Open in IMG/M
A2635W6_111519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	785	Open in IMG/M
A2635W6_112409	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	820	Open in IMG/M
A2635W6_112531	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	731	Open in IMG/M
A2635W6_113318	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	842	Open in IMG/M
A2635W6_114684	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
A2635W6_114908	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
A2635W6_115145	Not Available	735	Open in IMG/M
A2635W6_115169	Not Available	686	Open in IMG/M
A2635W6_119051	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1307	Open in IMG/M
A2635W6_120663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	616	Open in IMG/M
A2635W6_123554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	772	Open in IMG/M
A2635W6_123910	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	579	Open in IMG/M
A2635W6_153130	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	609	Open in IMG/M
A2635W6_170954	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	524	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
A2635W6_102152	A2635W6_1021521	F013176	MGRLRRFAFGKLAFTFAFALSTLVFGLDANAGVQWCESDPVFLVNGAIVDVTTAFPTNYTSTIKEPVAIELLVPTNAIALVVSLPTNVPMTAKISRVLPSGGLLSLGVPVIVKVTYKASASFDTKTKVTGTFLWLSSTVYGKSNVMTQVKYTLIGL*
A2635W6_104518	A2635W6_1045182	F079923	LLIRWGIGAGMRLLVLVLYAPLARVMFLSLDAALVSLVTFFFMTMMAEPLLLEYDR*
A2635W6_108741	A2635W6_1087411	F057774	MVSVIVSIHLRKMFVEVRKMFVNARHAEQDVRERQASRNF*
A2635W6_109101	A2635W6_1091011	F028362	AQQMGGMKMDFSETSAKVDSLGAGPAILGHPTSHYRVTTGMTMTISAMGQQQTVKIASSNDAYYATDIKGFLNPFTTLTGGDMAAIFGTSNKDFGDKMKAMQQKLPKGTPLRALSTATIVAQGQTRVTSSAAEVTGIQWVDTDPKTFEVPSNYTATQLPGMGGSSSGSIPPPE*
A2635W6_111340	A2635W6_1113401	F014078	VDSPGRSSLLQEFTTQQNENAFLRAFSFSTTQLPVDSASDVELADRVIMMDEIGFIFQLMEREQKVGSKSGNLEKWITNYVVRRGVKQIQNTRDLLKSYVGLSLVNNFGHRVFISPRDPDLLVSVVVYRVPPKTRAFRAARFKKNRNGGFVHILRDVDYFEIVHHFVTPAELTDYFGFRRDILISWDPAATAVSEAALIGQYLLEDYSSAPDERFESASRSRGGPTACEFSFVLDSLATTIASQEGEYADTDSYEVLAELA
A2635W6_111519	A2635W6_1115191	F030923	TGNRALVSWRQRHELSVGTSDERAVTQVKRLSLVMIINRRPTASYWLEGNSRSPQEAMVTGDCGGVREHGTFGNGSIEEPERSTVVSARSGNERSMLDEWIIPEKGKRCSGSRIRW*
A2635W6_112409	A2635W6_1124091	F055264	MSSRTGLEAEAINRLTDGVQPPVMRAILVQCLAGDIAPSAAISRMLAEGPLSTVRGAIDVVTERAASISRASDMLVHDRVDELTQVFVEKMAALVDVGDATKISSAAKAAREALSLIHISEPTRPY*
A2635W6_112531	A2635W6_1125311	F015243	PDNQPPDTAMMKNLRDKLFGPRANRDASATTLKKEQTLAKINEPDAGTGKPRARRTIGLTEARLRAANEQSWLTSSRGWSNFFGRFTR*
A2635W6_113318	A2635W6_1133182	F002431	MQNINNKTKSTKGQIARSVRFDIVADKNEEFHTLFRNEVLPILKKQAGFKDELLLVQDQHVLAISVWNDMDSARKYESATYPQLDKALRPVMTGRPTVETFKFDSLSTIA*
A2635W6_114684	A2635W6_1146841	F077732	MAVKVFIKPDRRYYQDREGVFRPIENLSITASTPTYPAVLHKTRRTMILADDRSHAVVALDRELVVT
A2635W6_114908	A2635W6_1149082	F030266	MTRRAKLWRAGAMLFAFVNLAGMGFALAMDEMMHAMAHVFLLFLGLGAYLLWKTLTTWATTRSGDQLSQASPLPSSGRDSTQKLGDQRIDYLQRSIDALALEVERIGEAQRFKDKLHTERGESAPPKKLPPEE*
A2635W6_115145	A2635W6_1151451	F051312	MKATRLLLAAMVLGTAIGASQANAQCSSSSGSCFTTN
A2635W6_115169	A2635W6_1151691	F004019	MQHVELQTGKWMTDPATSAQQTPEFLPRVDLGMSITIAATISLVSAILVAGATYEVVRGTLSSGVTRLLAVVSLLSLVGMFYGLIELALAVIATTAERRLSLIHISEPTRPY*
A2635W6_119051	A2635W6_1190512	F021632	MERVTLRIPLITEGPLHPQQVSREFQGALPETESVAFLAGIIREGLEAAVYPEYRDLIENADHWLVQQIALVTAVPNHVWIRNGFYPMTEWAPAHGE*
A2635W6_120663	A2635W6_1206631	F021888	MNNYKGISADDKHRIIAALKERGAGSCPRCRDSQWTVSEYSRIEVQATMDRNTAERTTIPAIMIVCEHCGFIAQHALQPLGVWPHAEADLIDAASARTKIATA*
A2635W6_123554	A2635W6_1235542	F019295	MTLGIQVNEIKHVLLADRWHEVESQSFALDAYEFMDGDQAVARGDGQLITSVGFMFREPGGQIVAGPLS
A2635W6_123910	A2635W6_1239101	F003763	MKELRTALTEQLKTPDGPTKELATLLRKVAREAHDQGIKPEQLIIIFKQLWNSLAESLRPQNADQYELVRQRLVTLCIRAYYAD*
A2635W6_153130	A2635W6_1531301	F083420	LKGLGAESSVGSERGETASGSIRAQPAQASVARTVQRPATRPGYPPQLSAPNALPPEAPAKSATPVNEGQLREMKRAMEATAQDSNRSRMTPEALKEERIGMLRQKDPALGAAIDELDLELLD*
A2635W6_170954	A2635W6_1709541	F028875	SSYLEAKYTKAVWDRPGTIDKTIPAADIAVAAHLPLLYVRAQESELAIKTAAALSAFDSSRTGLVERFVSDVGSRRRSRWVAKNSLLPCASVRVSTSNDAATLDACGVFRKKL*

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