Sample 3300001257

Basic Information
IMG/M Taxon OID	3300001257 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055073 \| Ga0000675
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001257 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0055073 | Ga0000675

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	3451280
Sequencing Scaffolds	20
Novel Protein Genes	26
Associated Families	21

Dataset Contents

Total Genome Size

3451280

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
Not Available	15
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002404	Metagenome / Metatranscriptome	562	Y
F005173	Metagenome / Metatranscriptome	409	Y
F007021	Metagenome / Metatranscriptome	359	N
F010816	Metagenome / Metatranscriptome	298	N
F012550	Metagenome	279	Y
F013607	Metagenome / Metatranscriptome	269	N
F015168	Metagenome / Metatranscriptome	257	N
F022353	Metagenome / Metatranscriptome	214	Y
F022592	Metagenome / Metatranscriptome	213	N
F023783	Metagenome	208	Y
F030674	Metagenome / Metatranscriptome	184	N
F035561	Metagenome / Metatranscriptome	172	N
F043766	Metagenome / Metatranscriptome	155	N
F046199	Metagenome / Metatranscriptome	151	N
F058683	Metagenome / Metatranscriptome	134	N
F070903	Metagenome / Metatranscriptome	122	N
F074382	Metagenome / Metatranscriptome	119	N
F074566	Metagenome	119	N
F093845	Metagenome / Metatranscriptome	106	Y
F098293	Metagenome / Metatranscriptome	104	N
F102592	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J13891_100006	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	4972	Open in IMG/M
B570J13891_100027	Not Available	2396	Open in IMG/M
B570J13891_100034	Not Available	2171	Open in IMG/M
B570J13891_100067	Not Available	1538	Open in IMG/M
B570J13891_100151	Not Available	1194	Open in IMG/M
B570J13891_100178	All Organisms → Viruses → Predicted Viral	1123	Open in IMG/M
B570J13891_100294	Not Available	934	Open in IMG/M
B570J13891_100402	Not Available	845	Open in IMG/M
B570J13891_100436	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	819	Open in IMG/M
B570J13891_100472	Not Available	802	Open in IMG/M
B570J13891_100534	Not Available	769	Open in IMG/M
B570J13891_100539	Not Available	764	Open in IMG/M
B570J13891_100729	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	689	Open in IMG/M
B570J13891_100988	Not Available	620	Open in IMG/M
B570J13891_101108	Not Available	595	Open in IMG/M
B570J13891_101137	Not Available	591	Open in IMG/M
B570J13891_101176	Not Available	584	Open in IMG/M
B570J13891_101373	All Organisms → cellular organisms → Eukaryota	553	Open in IMG/M
B570J13891_101541	Not Available	533	Open in IMG/M
B570J13891_101816	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13891_100006	B570J13891_1000066	F102592	MNVVDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYNNDFLYKQGLTCVINQIPTNDTLLHIKVFNYKLIPLTFEKESLQFICHT
B570J13891_100027	B570J13891_1000271	F002404	MAASCSDGGAAVCSDSDEHIRHVSGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTSTDLYIDSIRLVGFCGAGDINWAIVTRMKESDNPPRESFHGMFPKECLPMLHYMRPQFRFLIYLGQNNSRFNMADELDRFFYDMEKVASGDASVWGAPVVIDGVHILPEVECVVPSWLRQEFFARTSDLASPAGQHYVYPGVRSPLLLPTDYIRKYFSIY
B570J13891_100034	B570J13891_1000341	F015168	MSRQLIVGNQGRTHQVGAYQGSFXGRERIAYQDLPSIHEIEQILEQLTANITLRTEDIPXRPITLPPIYTELSEXDVYTEMARLDLQYDDLRTDKPRTASLARLCKAXCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLVEPFMGPQACPYCPTILQITEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEVHSQASALIIMFTETATHIRTQQALQLSLFIEVTLRLESFYPAEKQNKEPHYVSYLG
B570J13891_100067	B570J13891_1000671	F035561	MDLVTPNFRLAESVLETLSESQLECYICHHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFVPGPSPDRRMDESTDFGQPRWWSSYEWALGGRRPTFRGKTIWNWQPLLGLGQK*
B570J13891_100151	B570J13891_1001511	F010816	MSLFYWLLLIAAISLTESIITSTGRSQQISNVPHNTTTHTTNENQEETSLQLPRVKRQTVETLKKFINITQAIPVKTVYIPVRMHQFNKMIPFQQVYSQITNLKLTLRNLDPTSSTRTEEIQGKDVNYVKSSYPRSMNQNSLQCAERGGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFTEVNKRGLSCIEYLVNIASTLGLEFYRGTPPQILMEIVTLFPQTVIHPVLDSNMITLQEDPRTIVYCTVPKQAANQRPDELTRIIQKKFYNHQSTLFSAILESYEKILENQEHLYALLLITRIPSKTSNKTFADQCKAIKRLIPVNIPSQITTTSYLSTTFLQTTKENSL
B570J13891_100178	B570J13891_1001784	F074566	MTDRDHCMEVVKAYDKVTIVMDCIMEHWLEGNCNPPKELIDEYFETKDAALQALYNDFENIKANQVFAERTRGMNRAFYKKIDKQFGVTETPMLFEED*
B570J13891_100215	B570J13891_1002151	F013607	GSPRPRRLDERHHREEWDRRREASPSDREPPGLYRTAPPRSGRPRSSSREKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERLAAVRRRELCVL
B570J13891_100294	B570J13891_1002942	F046199	DNFLKSMKEIRLEWLLRPFLYYNREKFFQTYEISKEFDFNYITPYNFKRPIFFRRSAPPPSNKTAYLSIFCPVSYKEIQLSYKNKYEQTTTVKYGWTMFSICSYDYLDLSQWSICTTQKPNEITLVSCNKPNFTMYILNDNRVPMSLLNLGLSSLYQNKLNSALNLTKYVVPKTLSQQAPPCYLFHLSPFDLPTEESHISSHISDW*
B570J13891_100402	B570J13891_1004021	F022592	WERNSRRGNSQPRAVGARGATPVGPVRSAGRGESAAPREARELYHSQSPWGLEANRDAERRPELLAEEKALVEELLKSAELRPLVSLVEARGLGLLRSAREGDELRTGANMSALLSAVASGKEEIQRIGRDRGWSAGITEEVLDRLQAMVREPIQMGSDVIMSSIPPKWREQATRRASEASRVIQKMTCDITTEDWSLERCQDYLVELEMATCGAMMALRLTDNDICSERVSQQVEHLSSKAREAKNMALELRQKHLDAKLQVKDRPARVPREFAGGPTGP
B570J13891_100436	B570J13891_1004361	F012550	TLVLRLCYACVTLVLRLCYACVTLALRLCYACVTLVLRLGYTWATLGLGLGYARVTLGLRSRYACVTLALRLRI*
B570J13891_100436	B570J13891_1004362	F012550	MCYACVRLELLLRYATLALRLCYACVTLVLRLCYACVTLVLRLRYACVTLVLRLCYAWVTLGLHSG*
B570J13891_100472	B570J13891_1004721	F070903	VDEFDDAQINNNKTNELAFVNSLHAHRDLSKTFRDTLRSRKEKLITFFLSKHDQYVKIPGVGEHTESDID*
B570J13891_100532	B570J13891_1005321	F098293	SSSSSPVKIDLKIILAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKEAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGKAFNVNAFHICQTTHLLQHNIIAV*
B570J13891_100534	B570J13891_1005341	F022353	HMVDLTGNGTGMKTLEERVNCGLQGQGSARGSPGGPGRPHIQLTIRRIAVWKRMATEDAIKKIIIRKAHDILPSHLAGGMDASEGTYVWDHIQRGCSGGEWEELYKGKLGILKGEVITLDQSAGQRAWLKLGEVVTICGKRMRSTHLRRVYVRWTRPQRIREVITTHPTSREEKELEGMRLEWSYQRGRDSYMIRRELREAATGGCWTRGTLAELRQSQAAGTGGARSAAAHFGVGHLAVRSGGVVYIARCRMVV
B570J13891_100539	B570J13891_1005391	F046199	ILDSENRISGFSFVRKFNRKSGTYYMVKNDFLGNFMNIFVQRQLAPFLYYNKEKFFQTYEISKEFDFNYITPFNNKRPILFYPSDRAPKNQKAAYLSIFCPVSSKEIQLSFKNIYEKTTTIKYGWTMFSICSDDFMDLSQWSICTTHKPNEITLVSCNKPKFNMYILNNNRVPMSLLNLSLSSLYQNKLNSALNLTNYAVPKTLSQQAPPCYLFHINSRDLSIEYHGRCNCCGYFISSHISNW*
B570J13891_100729	B570J13891_1007293	F093845	MINVTLTTTTGSTKGMSFDTKGXVLVFIEKMTHALPIGTVLNIDAPLIGIHSGWIQGKKINN*
B570J13891_100988	B570J13891_1009881	F035561	LILLSYFLSLYIFSFYLFLGNMDLVTPNFRLADSVLQTLSESQLETYICHHGPREFETQKLRDIVAANMQPDIYPKRKDVYFALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRYWTSYEWALGGRRPTFRGKTIWNWQPL*
B570J13891_101108	B570J13891_1011081	F074382	EPVPPAAWHAGYPRWFGPCILGDICGSYHMPEVCRMFERMSPEGRLSVIQSKGLCHFCLRHPDTDRCPSQSLPACPVRGCMRMHHKMLHRALLREEARPVVVGEAQHAGDWRPGEDLPPSDSEDSALDVSDEGEAEEPAKIRLCMQMVPVEAANGAMRGLHTMYDWGSTVTLVRRESARRLGFRPAQVAQRIVNGLGG
B570J13891_101137	B570J13891_1011371	F005173	NERYLFGDSQYHNCKPYLDMEKKFFSDNAAIVREVYFDTDILLGVDSDEDLGVEEAVNAEDLVPVLSAEEIQWQHAAANDILNMEIVRVTPVNSDSEDEETMERVASPVVVEAVSDVTDTNEATGSADSVVNNSPNLVIAEEGDYVEEAVEGRADVPSGPGPFSEDVTMDDFLPRPTRGSVVFLAFSDW*
B570J13891_101176	B570J13891_1011761	F007021	RRNQEAGQATAPVLGLGLEAIQGMTNAMNAIANQVIRSSGRSGRNAGWPYFDGTFRDYPGFKRKFESFRTTYHRGTPTRELFQQFREMCLPEKLSIRIKSANTMENAWTRLDAWFGDKNLFIRDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGALGMLLIPANVELMVLPLPTWEKRTWREAQGKL
B570J13891_101185	B570J13891_1011851	F058683	GLNINIRKTTALCINTSPRVIQGLNQMGIETPETCKHLGLHLGKNIEDTMEITMRNTEPKRIKRRILGTTPPTDILHRALLINTALIPIYNHIFMALPVQKEMTKRLHQEILDFLWTKQHDGETIQKRRLVAKDRIPASFNRGGLQVPHPDDTAEGLHLNLLQKIQNKIRLPHRYPPSHLPAILEETLRDARC
B570J13891_101254	B570J13891_1012541	F058683	LNPLSIERANDLQPIIDLYNQYTTVSGLNINIRKTTALCINTPPEVTNGLNQMGIETPETCKHLGLHLGKTIEDTIQTTMRNTEPKRIKRRIMGTTPPTDLLHRALLINTALIPIYNHIFMALPVQEESMKELHQEVLDFLWTRQQDGEKIQKRRLVAKDRISASFNKGGLQVPHPSDTAEGLQLNLLQK
B570J13891_101373	B570J13891_1013731	F023783	ELLLCYACITLALRLRYTCVTLALRLCYACVTLVLHLRYTCVTLVLRLRYACVTLALRLGYTWVTLRLGYAWVTLVLRLRYTCEFNINIKLSRQLSVCHQSDVSLMSVCHHSVVCLQ*
B570J13891_101373	B570J13891_1013732	F012550	MHYACVTHVLGLSYSCVTLALRLRYACVTLALHLRYACVTLALRLCYACVTLGLHLGYVTLGLR
B570J13891_101541	B570J13891_1015411	F030674	PREEPKRSLSGIERNDRRGKGELWPSLDEQRRRAEEEYHRLGGLSHGCRQSWDLKMREEKGPGRKINGLFCWTAKDSLILHEVAKAAGLEGRGYGKKVDSLYVRDMESTCAYCVPLVDWKGEVQYLWARGVDYIARLAGKEDPRKWYAQFSELAMARDTEAERKAPIEMMIALDNWK
B570J13891_101816	B570J13891_1018161	F043766	SLKTTAIFTALTHHINTLCTSPSNEPVINQMFQALQLLTLNVQALIQAQIAHSANQNQTLTFQAPLTLLVTATTKTADIDQLFYNIFQMRLTPAELSYIYTMIENEKTKTLLWLKNLLPPNLQYPEILRTSQIIEKSVTQDQIVKTYRNHPELLQPGSANTQARTNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001257: Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences