| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001250 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0055024 | Ga0000655 |
| Sample Name | Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6749322 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 20 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | 1 |
| Not Available | 12 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F004315 | Metagenome / Metatranscriptome | 444 | Y |
| F004431 | Metagenome / Metatranscriptome | 438 | Y |
| F004758 | Metagenome / Metatranscriptome | 424 | N |
| F010816 | Metagenome / Metatranscriptome | 298 | N |
| F016479 | Metagenome / Metatranscriptome | 247 | N |
| F026862 | Metagenome / Metatranscriptome | 196 | Y |
| F028174 | Metagenome / Metatranscriptome | 192 | Y |
| F030736 | Metagenome / Metatranscriptome | 184 | Y |
| F034573 | Metagenome | 174 | Y |
| F035561 | Metagenome / Metatranscriptome | 172 | N |
| F038205 | Metagenome / Metatranscriptome | 166 | Y |
| F039598 | Metagenome / Metatranscriptome | 163 | Y |
| F046199 | Metagenome / Metatranscriptome | 151 | N |
| F049428 | Metagenome / Metatranscriptome | 146 | N |
| F056611 | Metagenome / Metatranscriptome | 137 | Y |
| F080046 | Metagenome / Metatranscriptome | 115 | Y |
| F096663 | Metagenome / Metatranscriptome | 104 | Y |
| F102145 | Metagenome / Metatranscriptome | 102 | N |
| F102592 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| B570J13876_100116 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 4673 | Open in IMG/M |
| B570J13876_100148 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | 4316 | Open in IMG/M |
| B570J13876_100239 | Not Available | 3546 | Open in IMG/M |
| B570J13876_100964 | All Organisms → Viruses → Predicted Viral | 1682 | Open in IMG/M |
| B570J13876_101376 | Not Available | 1239 | Open in IMG/M |
| B570J13876_101502 | All Organisms → Viruses → Predicted Viral | 1134 | Open in IMG/M |
| B570J13876_101896 | Not Available | 915 | Open in IMG/M |
| B570J13876_102065 | Not Available | 846 | Open in IMG/M |
| B570J13876_102111 | Not Available | 827 | Open in IMG/M |
| B570J13876_102128 | Not Available | 822 | Open in IMG/M |
| B570J13876_102170 | Not Available | 807 | Open in IMG/M |
| B570J13876_102469 | Not Available | 701 | Open in IMG/M |
| B570J13876_103077 | Not Available | 582 | Open in IMG/M |
| B570J13876_103088 | Not Available | 581 | Open in IMG/M |
| B570J13876_103252 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 556 | Open in IMG/M |
| B570J13876_103581 | Not Available | 510 | Open in IMG/M |
| B570J13876_103628 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| B570J13876_100116 | B570J13876_1001167 | F039598 | METLVVLILLAFAVWVVWKLVKDPDKNDDGVVDHKDVVVAAKEVAVEAKTEAVKVAEKVTEKVTEKVKKPRAKKAK* |
| B570J13876_100148 | B570J13876_1001481 | F102592 | MNVVDDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYNNDFLYKQGLTCVINQIPTNDTLLHIKVFNYKLIPLTFEKESLQFICHT |
| B570J13876_100239 | B570J13876_1002393 | F102145 | MVSYKIHVLKILAEKMATEKQEATETLLYNFDYPMVTECGAVKITDHHVFLQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWIPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTVDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL* |
| B570J13876_100964 | B570J13876_1009642 | F030736 | MMILEQPKCFTDFQWEVYQQELQEVKNTKTLDICFDCTIEYQRQMRNESKCAFPMKRLDKVTEYV* |
| B570J13876_101376 | B570J13876_1013763 | F034573 | MYRISKSVTKTNEEKVAEKIGVLLSDFHLDLEKVGVYMSRNLPYLVFRRALEVLESAEFQLDLVEQKRVEYNHDRLF* |
| B570J13876_101502 | B570J13876_1015023 | F038205 | MGNLIEIIGVACDECGGAGFIFFGDENNYDVESCDCALEIWGM* |
| B570J13876_101502 | B570J13876_1015024 | F000447 | MGYIEIFRMDNEGAGWVDLSEATPDEMLDLEIGLFQEGAL* |
| B570J13876_101896 | B570J13876_1018961 | F035561 | YLLFFILFSFLSFFCNMDTVTPNFELANARLADLSERELESYLCHHGPRRYDRNELRTIIAANMQPDIYPERINVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTNFGQPRFWTSYEWTLGGRRPSVRGRRTSMNWQLL* |
| B570J13876_102065 | B570J13876_1020652 | F049428 | LTEQLQSTSREIRNKQVDTAHVLKFITWTLNINITVVKIIFRPPKNTGHQRFCLSYGFQNTFIKIIKTPNSFKPIHVITYKNKYYILNQLPTIFPLLLRNVNPQDQLTYKRIPVRADQILDIVQGRTDHLNFPFTINIYTAYSYTGKASNEIRTNMIGQLLAKKNTEEIFHVFLTPDIEQRNVIKINALENVKHSAKFDKHDLFTNTLITEGDKTVFKRSPKEVLLNQKNCICEHKETQDYSPLSRDRNLGIEQLL* |
| B570J13876_102111 | B570J13876_1021111 | F004758 | AQPPRWVLIKRKALNDTRMEDSLLQYIDKKHTQVDWYSTITTIHKTGSKIGYTLDHYQRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSXLYSLATTYYNDDPDAESQRNKLLFNGLQHFTTGVTKEKLTRLXKYSQLQKIKLDYHDTLETCIXSEKTNGEPTEDLQFGQSKETILVFQANIAPVDSLLDNDITPIEFTLANPNKKDKKYGDTPKTKKPDERQPHIHAVKTRIATIPQPRENE |
| B570J13876_102128 | B570J13876_1021281 | F010816 | FKTQEQMSLFYWLLLIAAISLTESIITSTGRSQQISNVPHNTTTHTTNENQEETSLQLPRVKRQTVETLKKFINITQAIPVKTVYIPVRMHQFNKMIPFQQVYSQITNLKLTLRNLDPTSNTRTEEIQGKDVNYVKSSYPRSMNQNSLQCAERGGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFTEVNKRGLSCIEYLVNIASTLGLEFYRGTPPQILMEIVTLFPQTVIHPVLDSNMITLQEDPRTIVYCTVPKQAANQRPDELT |
| B570J13876_102170 | B570J13876_1021701 | F080046 | MNLNLANEIAKDKFFQPPSKFYNHKIVEIVSLNDETEIASVIVEKYGISRRANATKNGNTFAIELPY |
| B570J13876_102374 | B570J13876_1023741 | F056611 | MFIDKSLDKQKEHFKYGINQWTGEPNKPVFYNKEMAQKVREIKKPVTDLMMDIVQYPDFLAIRLY |
| B570J13876_102469 | B570J13876_1024691 | F016479 | PGLYRTAPPRSGRPRSSSREKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTA |
| B570J13876_103077 | B570J13876_1030771 | F026862 | YIMANHVNTHVRFEKLNDAGKAKLQELYSRVRTGSDKAVIYEWFSDIFGLDPEITDKYDWNLENIGPKWCYFEDRGEDYFNTVSAWSFPQAGLEWLFEQIVSVDPDFIASVMYEDEMPNFFGVYVYNKDGMIDGCEWGEEGEITEMMEQMVPSLKELDQEEQSEVYFDLWSENIWEIVHDKQDQVYNDIMESLK |
| B570J13876_103088 | B570J13876_1030881 | F004431 | MTITYSLWDGAQLLGVDFTANSADEMNKVVADLQKVSTNVVAHMRKVSM* |
| B570J13876_103252 | B570J13876_1032521 | F028174 | NDQTIQVRTAERLTAREKVTNIRDIDGNVIWVEINFPTDTPTVFEVMGTTPITDPFGRVVAYNSSMKRSENQVIGQ* |
| B570J13876_103269 | B570J13876_1032693 | F096663 | MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILEC |
| B570J13876_103581 | B570J13876_1035811 | F046199 | YNKEKFFQTYEISKEFDFNYITPFNNKRPILFYPSDRAPKNQKAAYLSIFCPVSSKEIQLSFKNIYEKTTTIKYGWTMFSICSDDFMDLSQWSICTTHKPNEITLVSCNKPKFNMYILNNNRVPMSLLNLSLSSLYQNKLNSALNLTKYAVPKTLSQQAPPCYLFHINS |
| B570J13876_103628 | B570J13876_1036282 | F004315 | MKVVSDVLLLLCLHDFGLRVTAEAGQALACLYSGARLYKGPGQSTLPQLATTRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEILLHLVYIFNIFMKTKG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |