| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001249 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0055031 | Ga0000688 |
| Sample Name | Freshwater microbial communities from Lake Mendota, WI - 21JUL2008 deep hole epilimnion |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 10190933 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053089 | Metagenome / Metatranscriptome | 141 | N |
| F071999 | Metagenome / Metatranscriptome | 121 | N |
| F102145 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| B570J13885_101226 | Not Available | 1118 | Open in IMG/M |
| B570J13885_102233 | Not Available | 710 | Open in IMG/M |
| B570J13885_102383 | Not Available | 685 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| B570J13885_101226 | B570J13885_1012262 | F102145 | MITECGAVKITANKLQFSEKPTDYVENSLTRRRNITVYFENFPVFSIDQILIHTGRDFYRVKEMIEKCLQSYSYLISKTYFSPHSDWFNSIKYYKTLSTEFFTSNTFHLSCFEHTFITCIELSVINKECDEKEIPLHFQLCIGKHVVFCTERDLKCVTQAETVHFIVRFILQKLLNILLL |
| B570J13885_102233 | B570J13885_1022332 | F053089 | LADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI* |
| B570J13885_102383 | B570J13885_1023832 | F071999 | HSLTHWYTLTFLIIFNLINNLYLCPLGISVYVQTAGPSDFQNVSGISFLPANFTIDEDNFSSITEHSLVVLDDFSFKFVNKKQAKINFLKVVNYLILVIHNLFSNNLSNDILCAHHVFLTFTNLGYLIMR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |