Sample 3300001248

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300001248

3300001248: Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion

Overview

Basic Information
IMG/M Taxon OID	3300001248 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055064 \| Ga0000678
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	9132121
Sequencing Scaffolds	10
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
Not Available	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F009530	Metagenome / Metatranscriptome	316	Y
F011762	Metagenome / Metatranscriptome	287	N
F018650	Metagenome / Metatranscriptome	234	N
F029991	Metagenome / Metatranscriptome	186	N
F043404	Metagenome	156	Y
F053089	Metagenome / Metatranscriptome	141	N
F066479	Metagenome / Metatranscriptome	126	N
F083751	Metagenome / Metatranscriptome	112	N
F102500	Metagenome / Metatranscriptome	101	N
F102592	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
B570J13873_100433	All Organisms → cellular organisms → Eukaryota	2101	Open in IMG/M
B570J13873_100491	Not Available	1845	Open in IMG/M
B570J13873_100607	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1517	Open in IMG/M
B570J13873_100870	Not Available	1109	Open in IMG/M
B570J13873_101617	Not Available	729	Open in IMG/M
B570J13873_101825	Not Available	678	Open in IMG/M
B570J13873_101943	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	652	Open in IMG/M
B570J13873_102132	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	623	Open in IMG/M
B570J13873_102526	Not Available	563	Open in IMG/M
B570J13873_102704	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	541	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13873_100433	B570J13873_1004331	F018650	YVDFIEEELLPEINRLAEKYADWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13873_100491	B570J13873_1004911	F053089	LLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*
B570J13873_100607	B570J13873_1006071	F011762	MSKSKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDETSVRKYIGELEVETKMDKLENSLIKNVLSKKDKKEVLASKELSDMVPALEVLVDANF
B570J13873_100607	B570J13873_1006075	F003691	MNSRNTNEFNQFTETAYNTSRNEKPQYKNFAASKMSQSVKPNSIVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESATIKQIISEYPIKLGQIEKRFVAECKRELKAFGLTKRAIDIVLG*
B570J13873_100870	B570J13873_1008703	F102592	MNVVDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYXNDFLYKXGLTCVINQIPTNDTLLHIKVFNXXLLPLTFEKESLQFICHTVLAKYP*
B570J13873_101617	B570J13873_1016171	F029991	MHEKTLFPGDETSHSFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVDTQYTITGIAINIQNMYLQVSKIFYIKILKYLKLKIFEIVQYLKLKLKYLK
B570J13873_101825	B570J13873_1018251	F083751	MVIQIAFLILHKISPLENALTEMTLRKFVYLFKNLSSTYTVISRIGKFFVS*
B570J13873_101943	B570J13873_1019432	F102500	LHTFFFLIFFRKLFMRLGGPEALDFFQSVQKANFHFAYVNSARNFIINRVENLFNNTRRAIMFANKQTFLIHDAEQDCSQTLSSTEEKVNTTISDFIQSTYPKQKYLKIVANIFEKHNLVNDDLFFVNFPDIHLADFCSFINNKFDKKENVRMIKLCKYIQTQKIRLPNVCVKNSRAKKYLC*
B570J13873_102132	B570J13873_1021321	F009530	TMTMTITYSIWQGSKLLSIDNIAHEVKAIDHLIASLNDSELGKVKKFTANIQKIEAGK*
B570J13873_102526	B570J13873_1025261	F066479	FFFCRAGDVQHIQENRLFFTPGYYYRPNQLKSMTCLLGNTDARTVYRNFDLANLNVNLGDRTHMLYNRYLCYNRFLPPDEKHYFAHLATNTLAVAPGSATDQKGAFNIFPMSLTTEEMNKSTSSALGK*
B570J13873_102704	B570J13873_1027042	F043404	MIDTTDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEV

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