Sample 3300001244

Basic Information
IMG/M Taxon OID	3300001244 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055101 \| Ga0000661
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001244 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0055101 | Ga0000661

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	1552852
Sequencing Scaffolds	17
Novel Protein Genes	20
Associated Families	18

Dataset Contents

Total Genome Size

1552852

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
Not Available	12
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001989	Metagenome / Metatranscriptome	607	Y
F006499	Metagenome / Metatranscriptome	371	N
F010896	Metagenome / Metatranscriptome	297	N
F012550	Metagenome	279	Y
F013607	Metagenome / Metatranscriptome	269	N
F018650	Metagenome / Metatranscriptome	234	N
F020309	Metagenome / Metatranscriptome	224	N
F022592	Metagenome / Metatranscriptome	213	N
F023783	Metagenome	208	Y
F035561	Metagenome / Metatranscriptome	172	N
F046199	Metagenome / Metatranscriptome	151	N
F046830	Metagenome / Metatranscriptome	150	N
F049408	Metagenome / Metatranscriptome	146	N
F052374	Metagenome / Metatranscriptome	142	N
F083751	Metagenome / Metatranscriptome	112	N
F098293	Metagenome / Metatranscriptome	104	N
F102145	Metagenome / Metatranscriptome	102	N
F102592	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J13887_10002	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	5041	Open in IMG/M
B570J13887_10010	Not Available	3472	Open in IMG/M
B570J13887_10046	All Organisms → cellular organisms → Eukaryota	1925	Open in IMG/M
B570J13887_10059	Not Available	1707	Open in IMG/M
B570J13887_10067	Not Available	1597	Open in IMG/M
B570J13887_10112	Not Available	1250	Open in IMG/M
B570J13887_10140	All Organisms → Viruses → Predicted Viral	1097	Open in IMG/M
B570J13887_10155	Not Available	1037	Open in IMG/M
B570J13887_10164	Not Available	1007	Open in IMG/M
B570J13887_10168	Not Available	1001	Open in IMG/M
B570J13887_10351	Not Available	687	Open in IMG/M
B570J13887_10356	Not Available	681	Open in IMG/M
B570J13887_10538	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	563	Open in IMG/M
B570J13887_10609	Not Available	536	Open in IMG/M
B570J13887_10658	Not Available	515	Open in IMG/M
B570J13887_10669	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	511	Open in IMG/M
B570J13887_10678	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13887_10002	B570J13887_100026	F102592	MNVVDDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYXNDFLYKXGLTCVINQIPTNDTLLHIKVFNXXLXPLTFEKESLQFICHTVLAKYP*
B570J13887_10010	B570J13887_100104	F102145	MMVSYKIHVLKILAEKMATEKQEATETLLYNFEYPMITECGAVKITDHHVFLQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTFDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
B570J13887_10046	B570J13887_100463	F018650	KYVDFIEEELLPEINRLAEKYADWWTFKPSSPLKAYLSDREIVMDEYFSLXELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13887_10059	B570J13887_100591	F035561	MDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWSSYEWALGGRRPTFRGKTIWNWQPL*
B570J13887_10067	B570J13887_100672	F083751	MVVHIDFLILHKIFPLENALTEIMTLRKFVYLFKDLSSAYTVITRIGKFFVS*
B570J13887_10112	B570J13887_101121	F083751	MVIQIAFLILHKISPLENGLIEMPLRKFVYLFKDLSSTYTVISRIGKFFAS*
B570J13887_10140	B570J13887_101401	F013607	QRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMAEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKNKTPEERLAAVRRRELCVLCFRHLDTKRCWSLGKLNNCNVRGCGRGHNYLLHDVLQNEEAMMVSAVPGQTGRQESSLRCRQMVAAEN
B570J13887_10155	B570J13887_101551	F049408	HGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLAEPFMGPQACPYCPTILQVAEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEIHSQASALIMMFTETATHIRTQQALQLSLFIEVTLRLESCYPAEEQNKEPHYVSYLGGYSSNKK
B570J13887_10164	B570J13887_101641	F052374	TLKVLPAPEARSLRSRENEAAQQFRYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDHALDDVRGHALPQKEEADDFLRADEQEKRGQWMSECLRMTQNAINLASQANRALTVGDWSRQDCEEFLDDLEREFKKVNKELDTYPSMDCEPKVKKGLADCRLRLEAARYEAEKVVTRLLRDHDAWGHVSREGRPRERIPETREEFRSPRDEGESLDKALPVRFESLRLERNGAGGEGPGEERSRSSRDVQEERPATSTPVGSDREQRRKRSPEGISGIRDVHQPPLASRREASPGRPSAGRMYPSPTESSDDEYD
B570J13887_10168	B570J13887_101681	F022592	LNSEEFRETFLRNDREGPTKAEKAGKMAENNAWERNSRRGSSQPRAAGARGATPVEPVRSAGREESAAPREARELYHSQSPWGLEANRDAERRPELLAEEKALVEELLKSAELRPLVSLVEARGLGLLRSAREGDELRTGANMSALLSAVASGKEEIQRIGRDRGWSAGITEEVLDRLQAMVREPIQMGSDVIMSSIPPKWREQATRRASEASRVIQKMTCDITTEDWSLERCQDYLVELEMATCGAMMALRLTDNDICSERVSQQVEHLSSKAREAKNMALELRQKHLDAKLQVKDRPAGV
B570J13887_10351	B570J13887_103511	F046830	QEFYHTSTLESELVYMLRDRCMKKEMADKISHEETIEGCLETLGKHYYRPVKAAKELMAEVTAFKKMQGKDYGRLFEYYVTLQTVIGEAEREKDLSYLLLQPENLILMESVLPTRELELWRNMQGDEKSPDLGKVFKEFIAFIAERESWVRRQVTHSTAPPPGQGGRRPDVRTKRAADTGSSHRPAEKKLARKKTKGRSSGQADGATVRVKLKQGAYTTTLETVAAPS
B570J13887_10356	B570J13887_103561	F001989	RYLSEPNCLIQKAGPVHLLIGMDHAHLMPEHVAESADLSSQLRLMSSMFGGQHILVGEGAPRLSWVDAMDADERYEAAANRRRKREDCRKMAQEARQTALKHTHKLPRRLWNEDKEKSHSTVRGRPQSGGECGSSCKERRSLWKEELTSLSTLVGTVATLLAVITPSEGVEIGGSPGERSLLKTEPGMENILIMDYWMVLPIIVMVVTSLIMRVQKHLGETWRPGED
B570J13887_10446	B570J13887_104461	F006499	RANVLYNRHLDFSVTDGNKELEDAKGNYPLMKSILLEKWGIADIVCDQYLEGIKRIKMPSDPKDKVGMLTYVKNAYSRLVTLTKLEVDRGQPVPGLEDYFLSNQFLKRVHRLLPEELGSRFLMKIQENGESYYLMKGKPYMDRIIALLRCYYKSLEIALEDRPDLPIITKSGTVSSAGINLMSTSGYASGQESHSPVEPPREPAQL
B570J13887_10522	B570J13887_105221	F098293	SSSSSPVKIDLKIILAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKEAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFE
B570J13887_10538	B570J13887_105381	F023783	MHYACVRLELLLGYACITLALRLRYACVTLVLRLCYACVTLVLRLRYAWITLGLHSGCVTLVLRLCYACVTLALRLDCTWVTLGLCYACVTLALRLLYACEFNINIRLSRQLSVCHQSDVSLSSLCRLSSIGKHALRMC*
B570J13887_10538	B570J13887_105382	F012550	MHYACVRLELLLGYACITLALRLRYACVTLVLRLCYACVTLVLRLRYAWI
B570J13887_10609	B570J13887_106091	F020309	NITLAPAIPSAPADPGTMVNYQYQEDQFLKFNVAPIQWNIVTGPYDAMSLQSAVNVSKTETKRVRYDPISRVVTDMEMNRMEYVPKPPANVLMNYEARLAKLPPIETFTDNEGVIRHKIYMHLSYMPNSNRWVNVQTGQPVTGLASPKEYSTAVRY*
B570J13887_10658	B570J13887_106581	F046199	TYEISKEFDFNYITPYNFKRPIFFRRSAPPPSNKTTYLSIFCPVSYKEIQLSYRNKYEQTTTVKYGWTMFSICSKYYNDLSQWSICTTQKPNEITLVSCNKPNFTMYILNDNRVPMSLLNLGLSSLYQNKLNSALNLTKYVVPKTLSQQAPPCYLFHLSPFDLPIESHISS
B570J13887_10669	B570J13887_106691	F010896	YAINMVATSERHVLPKAIPYHRSQRSPSSEGRGGRYSRPGSFGRNVKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQNCVMFKECGEKHAPWACDAFKKLSPQQRLKKIEERELCHLCYRHLQGRDCWSKEKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKA
B570J13887_10678	B570J13887_106782	F012550	MCYACVRLELHLRYACITLALRLRYACVTFMLRLRYACVTLVLRLRYAWVTLGLHSGYAWVTLALRLRYACFTLANLT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001244: Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences