| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001218 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0055143 | Ga0000667 |
| Sample Name | Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 524133 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Not Available | 6 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010915 | Metagenome / Metatranscriptome | 297 | Y |
| F018650 | Metagenome / Metatranscriptome | 234 | N |
| F046199 | Metagenome / Metatranscriptome | 151 | N |
| F079377 | Metagenome / Metatranscriptome | 116 | N |
| F083751 | Metagenome / Metatranscriptome | 112 | N |
| F100723 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| B570J13882_10055 | All Organisms → cellular organisms → Eukaryota | 1085 | Open in IMG/M |
| B570J13882_10056 | Not Available | 1068 | Open in IMG/M |
| B570J13882_10084 | Not Available | 828 | Open in IMG/M |
| B570J13882_10110 | Not Available | 744 | Open in IMG/M |
| B570J13882_10136 | Not Available | 683 | Open in IMG/M |
| B570J13882_10168 | Not Available | 609 | Open in IMG/M |
| B570J13882_10184 | Not Available | 581 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| B570J13882_10055 | B570J13882_100551 | F018650 | EIVMDEYFSLEELRYRVMSILEHAAQFLNSDVIVLADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI* |
| B570J13882_10056 | B570J13882_100564 | F010915 | MIVVVQVGLDLYSLSYVKYMDHDVVQYVKHDLNAEDIAQFLGNN* |
| B570J13882_10084 | B570J13882_100841 | F083751 | MVIQIAFLILHKISPLENALTEMTLRKFVYLFKDLSSTYTVISRIGKFFVS* |
| B570J13882_10095 | B570J13882_100951 | F046199 | YPSDRAPKNQKAAYLSIFCPVSSKEIQLSFKNIYEKTTTIKYGWTMFSICSDDFMDLSQWSICTTHKPNEITLVSCNKPKFNMYILNNNREPMSLLNLSLSSLYQNKLNSALNLTKYAVPKTLSQQAPPCYLFHINSKDLSIEYHGRCNCCGYFISSHISNW* |
| B570J13882_10110 | B570J13882_101101 | F100723 | ATFVPTSRPQRKNIYKKKSTLTVPCGTLSTMMNKKWTPRSLRWTDAERQEKKLQSQNARQIRWMFWRESQVLREQIEKEISEKILAKRAAIE* |
| B570J13882_10136 | B570J13882_101361 | F083751 | MVIQIAFLILHKISPLENALTEMTLRKFVYLFKDLSSTYTVITRIDKFFVS* |
| B570J13882_10168 | B570J13882_101681 | F083751 | LFKLLFLILHKIFPLENALTEIMTLRKFVYLFKGLSSAYTVITRIDKFFVS* |
| B570J13882_10184 | B570J13882_101842 | F079377 | MPQ*SFFQTAGPTDFQNVLGISFLPANFTIDEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILVIH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |