NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001179

3300001179: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3



Overview

Basic Information
IMG/M Taxon OID3300001179 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0055350 | Ga0002994
Sample NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18909311
Sequencing Scaffolds26
Novel Protein Genes27
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNHC252B001
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB231
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 58111
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Budviciaceae → Budvicia → Budvicia aquatica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000454Metagenome / Metatranscriptome1118Y
F001274Metagenome / Metatranscriptome733Y
F004349Metagenome / Metatranscriptome442Y
F009040Metagenome / Metatranscriptome324Y
F009926Metagenome / Metatranscriptome311Y
F010048Metagenome309Y
F010481Metagenome / Metatranscriptome303Y
F014678Metagenome / Metatranscriptome261Y
F019014Metagenome / Metatranscriptome232Y
F022783Metagenome / Metatranscriptome213Y
F030923Metagenome / Metatranscriptome184N
F033965Metagenome / Metatranscriptome176N
F036449Metagenome / Metatranscriptome170Y
F037452Metagenome / Metatranscriptome168Y
F043376Metagenome / Metatranscriptome156Y
F046057Metagenome / Metatranscriptome152Y
F048591Metagenome / Metatranscriptome148Y
F053913Metagenome / Metatranscriptome140Y
F060462Metagenome / Metatranscriptome133Y
F061214Metagenome / Metatranscriptome132Y
F063780Metagenome / Metatranscriptome129Y
F067238Metagenome / Metatranscriptome126Y
F068379Metagenome / Metatranscriptome124Y
F075358Metagenome / Metatranscriptome119Y
F081675Metagenome / Metatranscriptome114Y
F086219Metagenome / Metatranscriptome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12660J13575_100008Not Available4186Open in IMG/M
JGI12660J13575_100016All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus3247Open in IMG/M
JGI12660J13575_100043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNHC252B002631Open in IMG/M
JGI12660J13575_100059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2444Open in IMG/M
JGI12660J13575_100062All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2359Open in IMG/M
JGI12660J13575_100115All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1984Open in IMG/M
JGI12660J13575_100208All Organisms → cellular organisms → Bacteria1626Open in IMG/M
JGI12660J13575_100217Not Available1602Open in IMG/M
JGI12660J13575_100250Not Available1531Open in IMG/M
JGI12660J13575_101059All Organisms → cellular organisms → Bacteria822Open in IMG/M
JGI12660J13575_101108All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium805Open in IMG/M
JGI12660J13575_101119All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
JGI12660J13575_101353Not Available737Open in IMG/M
JGI12660J13575_101388All Organisms → cellular organisms → Bacteria731Open in IMG/M
JGI12660J13575_101490All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense709Open in IMG/M
JGI12660J13575_101568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23694Open in IMG/M
JGI12660J13575_101682All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811675Open in IMG/M
JGI12660J13575_101773Not Available663Open in IMG/M
JGI12660J13575_102264All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium605Open in IMG/M
JGI12660J13575_102590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium575Open in IMG/M
JGI12660J13575_103194All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium536Open in IMG/M
JGI12660J13575_103500All Organisms → cellular organisms → Bacteria519Open in IMG/M
JGI12660J13575_103576All Organisms → cellular organisms → Bacteria → Proteobacteria516Open in IMG/M
JGI12660J13575_103577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium516Open in IMG/M
JGI12660J13575_103630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium514Open in IMG/M
JGI12660J13575_103932All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Budviciaceae → Budvicia → Budvicia aquatica501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12660J13575_100008JGI12660J13575_1000081F061214LSVISAQCRLVNEFAKLTNIILALKETPINGGLTDEGPKVA
JGI12660J13575_100016JGI12660J13575_1000164F046057MSRQSYLPSQSFGPSATAPGSAYLLLRLSALECLTSLADGLAYYALC*
JGI12660J13575_100043JGI12660J13575_1000431F019014EAVKLDVTQYTVQYELLRWQVIGLARNAAQRDTAADQRRGVGLALFLSKGMPEWIETVETVLRATLTPRAVDAPDHAPHEGSLPSSATAVCCLASVRHEVTMLLANLVLSTRSAVHQSSREGYRSW*
JGI12660J13575_100059JGI12660J13575_1000593F043376MSEIATFRTPTTNGLPRWSLTRYATARPNTCPVLHSAPHASAKRIVNATQSKPISQTCGHNNLIP
JGI12660J13575_100062JGI12660J13575_1000621F037452MGSSILSEVDDTSILRTGLSTCYWRPLGRLPASRLRPPRSGLERSDFVLWP
JGI12660J13575_100115JGI12660J13575_1001151F037452MGSSILSEVDNTLDLRMGLQTRQRFPVSWLPLSRLLPPRSGLERSDFVRWHEPDQ
JGI12660J13575_100208JGI12660J13575_1002082F009926MLGSLRVGRWGATSKIGFDHVGEDDARLGDVEGSDGRVHLVEALAAAQKFGIDRADFVEHLAQFAEVGEELADFGVGRIRNVTDPRALAGSTDCGKISLGAMPSSVDTVAVGPPAAFVGLDQRAAQYLFDRRQAARKLVATLAKSCR*
JGI12660J13575_100217JGI12660J13575_1002172F033965MELELVLKKELLQSGCELAPEEATQRGDGQEESSRGGDPSGTVGCKTASRNDVVYVRMMVKVLSPSMEYAKKPDVRTQMFRVAGEFEQRRCTRSEQQIVKQSLVLQG*
JGI12660J13575_100250JGI12660J13575_1002501F009040HGGERCGNVGTMIPAGTVERGERKRTVDEVSKAD*
JGI12660J13575_101059JGI12660J13575_1010591F030923MLPAGEIPAPERGTSRPTGNRALGLWRQRHELSVGTSDERAVTQVKRLSLVMIVTRRPTASYWLEGNSRSPQEAMVTGDCGGVREHGTFGNGSIEEPERSTVVSARSGNERSMLDEWNIPEKGKRCSGSRIRW*
JGI12660J13575_101108JGI12660J13575_1011081F036449GGNNEQISMPLAELNDLTFRLIPGHPVAPVGLWSRSRDILMWRSPQFLSVDVIGEWPARNTKTAPVSTAILRHLREIMSLGARLTKLEARQRCLAEVPKAYPGAFEKAWAELEPSCKRGRGKHGPRGH*
JGI12660J13575_101119JGI12660J13575_1011191F068379MNILRLGAGLSRPRLGKQVLVSLLSFALLFATLPPNLAAYQQDSQEP
JGI12660J13575_101353JGI12660J13575_1013531F075358RPFGAPAQGPQRGSAEINARRSEIGXQHLXANPAASDARAXINDKFQRYENKFASDPRISDGRREPLNRARVFLLNLIDLGYAPLMVDNWCDALLNDQIDDGMPMDLVDAYWGQPVETQEFVEYYVPYEVCTYRTADGDYRQVTYKNGVVSRPTSNVADVRIR*
JGI12660J13575_101388JGI12660J13575_1013882F022783MSTEHLLREFYNQMYRVHTQPGNAYDIGDHLHHLTVHKHLDQDPLIQFREAYRWVDQAGA
JGI12660J13575_101490JGI12660J13575_1014902F014678MIGSFRIERRGACSEIGFDHVGDDGARLGKVERCD
JGI12660J13575_101568JGI12660J13575_1015683F048591MDPAVATLDLAKAGAIIADMIESFLAGGAPPSNPEGADHDDLQDCRSTSVAASLHLHSSIDAGA
JGI12660J13575_101682JGI12660J13575_1016821F086219MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPASGRCGYKRK
JGI12660J13575_101773JGI12660J13575_1017732F001274VTIYQITLRDRETQTVVGYYNGAWTTDQRRALAFRRREAAEAHAARMRDRCPRNA
JGI12660J13575_102264JGI12660J13575_1022642F053913FGAGASRGSCSTTQFEGRLAMKAVSCCATTLALMAAIGLSPAMGQGPKPSGGRTWPGIAQPVEHDADPAHSANPSFQGASPQGTSQRGFVVMPFDPEAAKIKPHYEWQYHYTGRHAHWEGHWTLVTAPIQSAKPPTTPAP*
JGI12660J13575_102590JGI12660J13575_1025901F004349RPSNRMGDVQSNTRATLAVTVLMLAACGPTQNQAAKLPTASEILNKPDQASVKDAHFTLVAHIVSAGVAFDATGDGVIVIKPTQGSKFTMMTTIAGQPLKFEEIIIGGMEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDALAQGKAWHVKAKDASGSPFEAWVRESDGYPLKYATTTQGSSFTATF
JGI12660J13575_102876JGI12660J13575_1028761F000454MATLDEISKEKQRVSEALARVDAQREKLAGQLGELEATERVLARYSKGVRARK
JGI12660J13575_103194JGI12660J13575_1031941F060462DQDIRRVAIDTSNLLRSGFNSGGQYVLQPLDPTYGALQRYVAMALPDQAALATQIPIQVQDGSGRYWLPYGIGTPASIMTSLLQAEGWGATLGPRAAQRVSQTQILDGSGGRASSTVSWLQAYFGAVVTPVPAPSSGAGVTVVLGSDFTLKTFPAPGKT*
JGI12660J13575_103500JGI12660J13575_1035002F010481AGLIIDYKVFQASPKSPDQPNIFLYLTFKNMAAYGGNIGDKGIEQEYVARKVIGSTEFQNKKRVERSEYRKVLGIELIREIILK*
JGI12660J13575_103576JGI12660J13575_1035762F063780MGEVAALELEHKATAVRAQLAAALGQHGRLVYSNSLGAEAMVLTDIIWSYLP
JGI12660J13575_103577JGI12660J13575_1035771F010048VAIAAISLVAFLAFRWFERYRYGDNWRTSEFRGVAFGFLMWFGGIFGHRVPPPPQAKIELATKAEEPEPPRSGGATFSDQAADDKE*
JGI12660J13575_103630JGI12660J13575_1036301F067238KAMVVNVAESRNKISAGMIERGERKRTADDVSKAD*
JGI12660J13575_103932JGI12660J13575_1039321F081675NNGTTVGLNGDGALVYKSPGAGRFTFQTTVAGQQVSFEDISVNGTDYSMTIPGNGKWTATASTSGLGPSSFTGTSAFKYVGEENLPSGKAWHASANDKDGNPFDGWIRESDGYPLKYVITQQGNTLTLTFDKYNTGAAIAAPPASQVVKG*
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