NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001171

3300001171: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1



Overview

Basic Information
IMG/M Taxon OID3300001171 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0055410 | Ga0002904
Sample NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9372384
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. SS-41
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001356Metagenome / Metatranscriptome716Y
F003226Metagenome / Metatranscriptome499Y
F007280Metagenome / Metatranscriptome354Y
F011345Metagenome / Metatranscriptome292Y
F011941Metagenome / Metatranscriptome285Y
F015918Metagenome / Metatranscriptome251Y
F016713Metagenome / Metatranscriptome245Y
F018629Metagenome / Metatranscriptome234Y
F025553Metagenome / Metatranscriptome201Y
F030179Metagenome / Metatranscriptome186Y
F035372Metagenome172Y
F061340Metagenome / Metatranscriptome132Y
F062229Metagenome / Metatranscriptome131Y
F067850Metagenome / Metatranscriptome125Y
F070195Metagenome / Metatranscriptome123Y
F080456Metagenome / Metatranscriptome115Y
F092648Metagenome / Metatranscriptome107Y
F095914Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12685J13342_100008Not Available2948Open in IMG/M
JGI12685J13342_100106All Organisms → cellular organisms → Bacteria1746Open in IMG/M
JGI12685J13342_100156All Organisms → cellular organisms → Bacteria1577Open in IMG/M
JGI12685J13342_100181All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula1499Open in IMG/M
JGI12685J13342_100263All Organisms → cellular organisms → Bacteria1338Open in IMG/M
JGI12685J13342_100370All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1151Open in IMG/M
JGI12685J13342_100442All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. SS-41030Open in IMG/M
JGI12685J13342_100718All Organisms → cellular organisms → Bacteria795Open in IMG/M
JGI12685J13342_100778All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3758Open in IMG/M
JGI12685J13342_100844All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense734Open in IMG/M
JGI12685J13342_100978All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis678Open in IMG/M
JGI12685J13342_101417Not Available578Open in IMG/M
JGI12685J13342_101453Not Available572Open in IMG/M
JGI12685J13342_101513Not Available564Open in IMG/M
JGI12685J13342_101661All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium541Open in IMG/M
JGI12685J13342_101820All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis520Open in IMG/M
JGI12685J13342_101950Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12685J13342_100008JGI12685J13342_1000083F067850VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAIAAVFHEEEEKRK*
JGI12685J13342_100106JGI12685J13342_1001061F025553MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREGRGENFFLDILFYRMSVI
JGI12685J13342_100156JGI12685J13342_1001563F018629MGTDKKTQIRIIKXGMAGSIPESKAVSEERQKKDAMADLICSVSGWVAEFKRRRRPDPRITFQTQFKEA*
JGI12685J13342_100181JGI12685J13342_1001811F061340MNLSRNQISFLRDIPSNIKIDMTSG*RYHYFDGSFIEISNFIKKIGDDKIYLLIPLFRSSKSLSKATLNLSEPFLVDNKSNSTLIIKFILEQ*NSSGFTLKSDTILSYSFKFKRV*LS*
JGI12685J13342_100263JGI12685J13342_1002632F030179LIDTTITAGASRVASGLLCVHAIAITPAGSMELVRSSLSIASGLPRETVRSAPAIVFSGPAQRSLTLWPARSRSRQATLYTESSDSFVASAAVSIATGWSEPVPGRELHPLSPALFTAHYFNNY
JGI12685J13342_100370JGI12685J13342_1003702F011345MRRRFDNQLMLDLVPTKRRLLLGTAPEGLLQALADLLLEALGKQNNGIPAEREACDAPQDHA*
JGI12685J13342_100442JGI12685J13342_1004421F070195MTFPRTLTVIVLNLSPADSDASTGTARPINRSNLQCRPFLPRRLTHLRRIDLDHRSRAQTSRFPLERSNQDPTSS
JGI12685J13342_100718JGI12685J13342_1007183F011941MAESRQNRDAFQIQVSYSFDRLLEPKLARAYEILVPCREHPVGVRVKELDDEDGGNLRKG
JGI12685J13342_100778JGI12685J13342_1007781F092648MCCTPTLRWLIVLTXPPRYRCPLNXLPASRLLPPRSGLERSDFV
JGI12685J13342_100844JGI12685J13342_1008441F035372LEHDDELDAAGFEPSSDLHHFAKARMEPIADVGISRLFVGTM*
JGI12685J13342_100978JGI12685J13342_1009781F001356MAKEQKTKRPGSTARYRRVDVAALDRGRRGKHHELMAGILEELRNAPLGAALEIPLSEVGVGLANLRSAVHRAFSGKGITIETLADDSNFYVWKKDASTK*
JGI12685J13342_101417JGI12685J13342_1014171F095914MSTEAPKGKGEESEPLASRGLTIRSKLLVFTTGIGFLILAALTVTAFFLSAVALRSARLDGFRSLLTSLSQSINTFFADQRRDITAQSELQTIRYAVTELSSGYEHLLEDLDAAGFKADAAFLSQVRQNLQEAYEKGPMADLRALNQPVTGFDEFA
JGI12685J13342_101453JGI12685J13342_1014531F015918ISEVVKDFEQSLENLRPSTRRVYVAGARAAIRAARLELWQSPSATELLASLGKSPTEKRARISPFLDFLGDGEPKELVSDEDSAALQNWVIQRIAKQTRSAKNPSIATRRDSGLIAALCAAPARGTPRKWPENCLKIDGREVLLWDAAIEEPCFALPLRFWHAWRERLARPDQRRLYRKSLRWSQSRLLF
JGI12685J13342_101513JGI12685J13342_1015131F080456MTPILAKVLAVENQAXQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
JGI12685J13342_101661JGI12685J13342_1016611F003226MSQQLYVKTTVCSEYQRLLEESQSAMEIWNEHRSEFCQFRFIRREAGDELLRLQAKYARAYTALQNHERDCSLCQLVSRIEGRDSENSSDTLFDND
JGI12685J13342_101820JGI12685J13342_1018201F062229LLLPGIVALLLFLVFTYLYEQSRQPYFRAWQLGWGAYSLHFGLDAWNIFHEPSAWVYLASSLLIVFMALCLFVSTRLMRERFRVRWYDLVLAIAGVALTVWSLLHHMVHGVFHNEVAVPPHIRLELGTAALLLYCSLRFYLYAHQRSSLAFRMLALALALWGGLMAVGQLVSP
JGI12685J13342_101935JGI12685J13342_1019353F007280GKLDNIGGETLLVLTTARDLALRRAMLPERRTGATLGDMQLRSDLLNAGTATRGA*
JGI12685J13342_101950JGI12685J13342_1019501F016713MKKYLIVVSASFWITAGAALAQQFTTTPRVPPQAGVPRPLVEQNSNSSWFKKFQAAPNKLQLLNPAAPRQYGSGEQVVVADPLDPKQRPRFVRLLSIAF*
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