NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001168

3300001168: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1



Overview

Basic Information
IMG/M Taxon OID3300001168 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0055311 | Ga0002916
Sample NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14130027
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
Not Available2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S1561
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000233Metagenome / Metatranscriptome1512Y
F003359Metagenome / Metatranscriptome492Y
F004388Metagenome / Metatranscriptome440Y
F004457Metagenome / Metatranscriptome437Y
F013199Metagenome / Metatranscriptome273Y
F021410Metagenome / Metatranscriptome219Y
F029092Metagenome189Y
F030820Metagenome / Metatranscriptome184Y
F037452Metagenome / Metatranscriptome168Y
F055024Metagenome / Metatranscriptome139Y
F061057Metagenome132Y
F066391Metagenome126Y
F087386Metagenome / Metatranscriptome110Y
F096286Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12639J13247_100016All Organisms → cellular organisms → Bacteria → Acidobacteria3267Open in IMG/M
JGI12639J13247_100136All Organisms → cellular organisms → Bacteria2050Open in IMG/M
JGI12639J13247_100203All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1911Open in IMG/M
JGI12639J13247_100582All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1385Open in IMG/M
JGI12639J13247_100674All Organisms → cellular organisms → Bacteria → Acidobacteria1319Open in IMG/M
JGI12639J13247_100698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1301Open in IMG/M
JGI12639J13247_102473Not Available768Open in IMG/M
JGI12639J13247_102692All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156740Open in IMG/M
JGI12639J13247_104214All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii595Open in IMG/M
JGI12639J13247_105425All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae523Open in IMG/M
JGI12639J13247_105476Not Available520Open in IMG/M
JGI12639J13247_105659All Organisms → cellular organisms → Bacteria513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12639J13247_100016JGI12639J13247_1000161F004388MPGKKLYFLSVVFFFRRRGSASGDDLGWSKPVAEPLRGTILFVAVSAAPGKLATDWAEDCDNIILRRCPFCERDSIIGHGRRRKQAHDEHHDWIWIRRGRCADCGTTFTFLPLLSLPYTHFSLLARCQALLRRIAEHCSWEKASPKLKDPDRLPDPSTVRRWLSGLDFSQPALSFLNRTVTRVAHWLARGHQVLDEAGPLSSIAPTLEVLCPLRL*
JGI12639J13247_100136JGI12639J13247_1001363F003359MLPGSFVENKRSCGRANCHCADGKSLHTQYQISVLIDGQHKTFHVPKNMVDQVREMIRLRQRFEEAAAAICKVNLRRFLKEREKS*
JGI12639J13247_100203JGI12639J13247_1002031F087386MTKEELFAKYHINESHNVWETGIDSWHSVEVYRIMHEGKLPPADDLSVKWVIDFLDKQKDMKWWVKNVMSRKDWGSLYLTSKRMVCTMYEQILAELNK*
JGI12639J13247_100225JGI12639J13247_1002251F000233MRAAVKDKLKNAAPSPKVRKSKFQADLAPSEDSIVRTLKAELEMTSNTDFLSDALALFRWAVSERKRGHIIVSESSTGERKILVLPRLERVAPEVALPHVDIHWNERELESLAALASGQPAQPTKALIRAMRH*
JGI12639J13247_100582JGI12639J13247_1005824F096286MSRTHVKTICLEHKHGTLFDYSVKGKEVDHIRFAQAERSVVYVTVVFADRTEWSISIEPFSLPTARVSHFVSTEEDPVAESGLMFLPDHPDCYPQYDQIQQPPKQRMARKRSRK*
JGI12639J13247_100674JGI12639J13247_1006742F021410MQQLLNLVGWPPQGGAGPFDTRKATFATSPEMVTFRKVDRIVGTRVDMTCMFGKEVVTFRFFASNKGMAESVAEVLGRSGGQTLRDLGLLYIPDSEE*
JGI12639J13247_100698JGI12639J13247_1006983F037452MESSFLIEVDNTSILRTGALHCYHYTLNRLPAPRLLLPCSGLERSDFVQWPSAAVE
JGI12639J13247_102473JGI12639J13247_1024732F066391MELSTLEPSKKRAQRPMCSHCGRSLDIACRSNLVANGLRVLAGLVLALMLVPLAVIGWKYCSDLLSDRTSHSIFYHSLEDWTQY*
JGI12639J13247_102692JGI12639J13247_1026921F055024ISHPIFKTQVRGLTILMDLSHRESAKSQTVFLGHKPLFF*
JGI12639J13247_102692JGI12639J13247_1026922F061057MRRISGRYLLAVLLLSISTTALAQNLDADQKAYCTYLDEQAKAQSDLLRTPGALGAFTQPDTGLPLQLVAGAQLSLSNLKKSGITLEAARKNCELYKAATTVQLTLQYALPAVEKDALTHRLLLIDEASKSLEALIATTTQMVQAQDMTRPMLVSLLSTRIKLDEDRADTQTKIAALYVPQLSDQPLKLQVGAK
JGI12639J13247_104214JGI12639J13247_1042141F013199WNGFFDSVNPMSKNYGQKAASRGPKDQLPDPAAETQYLHYKSDEKKLRYATDIGKDELLDHDGDVAISIALSQFHPGTGETNLKASQLRVDTTQIHPYMDIIAPLAWTAIASVEPDKAGKVSLEQLGFKTPQAAQGTSKILLTQGTGKLAVNVSRAPGTSIFVKALNVIIAGTKIAAPLVTLPAISVPALSAFTQVL
JGI12639J13247_105425JGI12639J13247_1054251F030820AVIAQRTREVLSIFAQDAELTVVSTAATAGNYVGNGDPDDPATCPPPTGDTSATGQQGTLCTFFKYVAGGLQPANKWVSLTPAYKTKYVPVKKDDQWTSSTYFECHYFDVSTNPATGQPFWTAKSHVDLTGEAMKIDGKWLLTRVSTTAVGIPIPPAVGVAVP*
JGI12639J13247_105476JGI12639J13247_1054762F029092MKSYDNSGKLCGEINHSRTADGKSITTNTTYYNGRPTSQNISVVESNGRVTTTNVINGKLLP*
JGI12639J13247_105659JGI12639J13247_1056591F004457ERSTNPLLQATPDMGRTRWILILCAWTIVGLLFTVREIVVASVHGGHVNWVIVGVIELVYWNVWAACTPLVVALAKRFPLTGQRFVSHIAIHTVTSFMMAPLGSVTAYFLSRGLLGLLFRMTDPGALRLLSTFTVSVLSMSFTGILTYWLVVGLYQSVHFYQAAMERQTL
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