| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001121 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054688 | Ga0000760 |
| Sample Name | Marine microbial communities from the Deep Pacific Ocean - MP2253 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 28979385 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | West of El Salvador, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 10.09 | Long. (o) | -99.25 | Alt. (m) | N/A | Depth (m) | 3007.91 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012354 | Metagenome | 281 | Y |
| F013096 | Metagenome / Metatranscriptome | 274 | Y |
| F034217 | Metagenome | 175 | N |
| F050430 | Metagenome / Metatranscriptome | 145 | N |
| F081452 | Metagenome / Metatranscriptome | 114 | N |
| F082562 | Metagenome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12180J13270_1001934 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae | 1873 | Open in IMG/M |
| JGI12180J13270_1002100 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum | 1774 | Open in IMG/M |
| JGI12180J13270_1004181 | Not Available | 1021 | Open in IMG/M |
| JGI12180J13270_1004282 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1002 | Open in IMG/M |
| JGI12180J13270_1004295 | Not Available | 1000 | Open in IMG/M |
| JGI12180J13270_1005525 | Not Available | 821 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12180J13270_1001934 | JGI12180J13270_10019343 | F013096 | MLTDVVGDSAVGLSTLSQTNTVAVYXPEXPGVHDNAGLIDCPAVKDPVIHANDTVTP |
| JGI12180J13270_1002100 | JGI12180J13270_10021005 | F012354 | IPKPIPIAKKAIDNLNNVGLAVFLNPTYEIVPITRPTKSPTRFKIISKKNSNYADSVTVLNKV* |
| JGI12180J13270_1004181 | JGI12180J13270_10041812 | F050430 | LNHCLKNRNVMDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSAKE* |
| JGI12180J13270_1004282 | JGI12180J13270_10042822 | F082562 | TVIKYIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI* |
| JGI12180J13270_1004295 | JGI12180J13270_10042952 | F081452 | RCRTLADALLLSRLFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA* |
| JGI12180J13270_1005525 | JGI12180J13270_10055251 | F034217 | VITITTAVMADHTPNAAKSNSAMFYLVNRDKINTLEIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |