| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001078 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0071004 | Gp0055312 | Ga0002920 |
| Sample Name | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5533486 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → land → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Davy Crockett National Forest, Groveton, Texas, USA | |||||||
| Coordinates | Lat. (o) | 31.11 | Long. (o) | -95.15 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000579 | Metagenome / Metatranscriptome | 1011 | Y |
| F013050 | Metagenome / Metatranscriptome | 275 | Y |
| F018720 | Metagenome / Metatranscriptome | 233 | Y |
| F020104 | Metagenome / Metatranscriptome | 226 | Y |
| F039163 | Metagenome / Metatranscriptome | 164 | Y |
| F056810 | Metagenome | 137 | Y |
| F098798 | Metagenome / Metatranscriptome | 103 | Y |
| F103371 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12640J13246_100107 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus | 1990 | Open in IMG/M |
| JGI12640J13246_100162 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata | 1388 | Open in IMG/M |
| JGI12640J13246_100520 | Not Available | 689 | Open in IMG/M |
| JGI12640J13246_100617 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 632 | Open in IMG/M |
| JGI12640J13246_100699 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 601 | Open in IMG/M |
| JGI12640J13246_100714 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 597 | Open in IMG/M |
| JGI12640J13246_100727 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | 592 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12640J13246_100107 | JGI12640J13246_1001071 | F039163 | MSVIVTERFIGHIGSEKTPIRIVQQCGILVNSLTTEPAIWKTQC* |
| JGI12640J13246_100162 | JGI12640J13246_1001622 | F013050 | MSKGKQPRTRVIKVPKLLLSEIKEVFIVYNQEIGLEAAIF* |
| JGI12640J13246_100520 | JGI12640J13246_1005202 | F018720 | MSASSSRMGVAAFIAVLTVSAGTMLYLFWHFPLITAVVTVGVLAALGVLARLARSIDGIKDMDRTEQSV* |
| JGI12640J13246_100617 | JGI12640J13246_1006172 | F020104 | MARSLKTSYLLLALGVSAVLALLLGGLAYYEHRITTSDANQLTYATVEEKLETDLQARARSLSNITSSSLAAA |
| JGI12640J13246_100699 | JGI12640J13246_1006991 | F056810 | MEFMSIVDAKARAPAGCAAVGVYENGDLGIAARQLDKQLAGMITSLHGSGDFS |
| JGI12640J13246_100714 | JGI12640J13246_1007141 | F000579 | VVVDNATTISVIDFRRQSMALLWHSLGGTWTACDTPPALVHGIAYIRPTGPNICIFGQGGRLRLQVGPNQYALAENSPRITCTRGIASFGFRRRFTVRSSSGGVLFTDSYWTHQGRDFFRWLADKAEDP |
| JGI12640J13246_100727 | JGI12640J13246_1007271 | F098798 | FTINNNLNKQAKLTPAFYIKQRKNRKTIKGSKKYKIFLVGDIIEFLFVFKSVPLLYSGICIAVRKKSFIMPDVTLILRNIIMKVAIEITVSFFYNRIYKLRFLDYKRKFYFYNKNKIFFIRKRLNKESRVGD* |
| JGI12640J13246_100776 | JGI12640J13246_1007762 | F103371 | MELPGYDDWKTHNPDDDRCEFCGMHPREWSAGWQPTRCTGECGLSWRDPDFEYEQARDDAQFFGNDIQANDDEY* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |