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Sample 3300001077
3300001077: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost
Overview
| Basic Information |
| IMG/M Taxon OID | 3300001077 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0000103 | Gp0054749 | Ga0002684 |
| Sample Name | Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 236465129 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus | 2 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | Berkeley, CA |
| Coordinates | Lat. (o) | 37.86971 | Long. (o) | -122.31414 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F024195 | Metagenome / Metatranscriptome | 207 | Y |
| F036417 | Metagenome / Metatranscriptome | 170 | Y |
| F098955 | Metagenome / Metatranscriptome | 103 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| JGI12419J13241_1000197 | JGI12419J13241_100019723 | F024195 | MGDKVFNVLGAIVTVALVTTIVSRPTSAQVIKSMGDAFAGSIRAALGK* |
| JGI12419J13241_1001633 | JGI12419J13241_10016332 | F024195 | VSGDKIFNVLGAIVTVALVTTVVSRPTSAQVIKAMGDAFSGSIRAALGK* |
| JGI12419J13241_1007798 | JGI12419J13241_10077981 | F098955 | MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVIS |
| JGI12419J13241_1008753 | JGI12419J13241_10087532 | F098955 | MDSSAIPVFLAGPFPVLHTFRVQEIEQEVELDVALLISGIPTMLAATRFPLDDTWERIQRALSSGDARLGVAGMPHETQSITGTPEIFPSAYVGLECANGERLVLAHIKGSNREQESEAYARSVISAILEGKTPAELGEPIED* |
| JGI12419J13241_1084119 | JGI12419J13241_10841192 | F036417 | SSCPGATDRLFVSSMVYPARVPLRKRIPTVLVRLATDDGEVVFRARWNRSPLELQRNILFRLRRGAPLWFEDEWGHGLCFRPECVWAAMVDGR* |
