| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001076 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054644 | Ga0002550 |
| Sample Name | Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5408780 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 3 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → fertilized soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Manhattan, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 39.070856 | Long. (o) | -96.582821 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000707 | Metagenome / Metatranscriptome | 926 | N |
| F001434 | Metagenome | 695 | Y |
| F001823 | Metagenome / Metatranscriptome | 630 | Y |
| F002517 | Metagenome | 552 | Y |
| F037827 | Metagenome / Metatranscriptome | 167 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12403J13228_100131 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 872 | Open in IMG/M |
| JGI12403J13228_100228 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 738 | Open in IMG/M |
| JGI12403J13228_100369 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 637 | Open in IMG/M |
| JGI12403J13228_100457 | Not Available | 602 | Open in IMG/M |
| JGI12403J13228_100655 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 540 | Open in IMG/M |
| JGI12403J13228_100910 | All Organisms → cellular organisms → Bacteria | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12403J13228_100131 | JGI12403J13228_1001311 | F001434 | LLDDPRFNRNYDFVFYGFKTTFHRDLPAFEAEAAKLDRMLTHLEEDYKSITIVTHSNGGLVAMRALLNRAKDFPAKQPHKIHRIVMFTPLTENVSLTGQPDIVKLLGKQSTDVAQMQANTSSKLNSVKQDLKALLDPQDPLAKARAEAFMKDVAEHIYIVNAEGDKLVDVGPNGEKIVSETVRILSQLPTLGAPRLVTLRYSDIGGKEEDARERKSGLRNPAYVHGIVVKMGAQQDFSFFDRFEELLFDRIGTPPRNSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPM |
| JGI12403J13228_100228 | JGI12403J13228_1002281 | F000707 | MQTKLPLNGTIQHPDLAEALRGESGTFFCQQGGQGYIVTAAEGFSIKSLRPVGRKIVEANVSCRLLQNPGRLPKSPRMFLSSALYHNPLANSEPPKG* |
| JGI12403J13228_100369 | JGI12403J13228_1003691 | F002517 | INAERDEVVDVGPNGEKIISEALRKLSQLPTLGPPRLVTLRYSDIGGSEEDAREKKSGVRDPSYAHGIVVKMGGQEHFSFFDHFEELLFDRIGTPPRNSAANVEQIRQSSNDRIGNTVFEMNKFVVDKNPMVGLAWRNISDAVQAKFRDVPEPARQKQIEDLTKQTYYVYIFLDLYARMDDLRSRGIMSPNDEMIVEWKHDWLPNLMGSEIG |
| JGI12403J13228_100457 | JGI12403J13228_1004572 | F001823 | MRAFDRDLIRGGHYGQRPCVPHSKAEHMAAPTNAANVKKALANSAPSTHGPX |
| JGI12403J13228_100655 | JGI12403J13228_1006551 | F037827 | RMRSFLTYLSERCKWASKGTGAVCGWVSLIVGATVAVLLWFYPRWFHDHISDRMNACVLVIVPLLAGGSVFLIRWFVSPYPIYMQVRRTLNTLTDTKKEERAKAVHGCFERSAAILKQHHSLLLSFHALSRAEGHRLESNQEVAEVCDLIQEAGYDHPFEGISPGYVPEKDWLPFLKYV |
| JGI12403J13228_100910 | JGI12403J13228_1009101 | F001823 | MRAIDRDLIREGHYGQRSCEPRKQAEHMAAPTMLQTFKKVLANSEPSTHGGKADIASYACVL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |