Sample 3300001068

Overview

Basic Information
IMG/M Taxon OID	3300001068 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054765 \| Ga0000808
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0372
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	51148844
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	East of Porto Seguro, South Atlantic Ocean
Coordinates	Lat. (^o)	-15.83	Long. (^o)	-33.41	Alt. (m)	N/A	Depth (m)	4003.17
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003122	Metagenome / Metatranscriptome	506	Y
F004881	Metagenome / Metatranscriptome	420	Y
F006423	Metagenome	373	Y
F010197	Metagenome	307	Y
F012125	Metagenome	283	Y
F033215	Metagenome / Metatranscriptome	178	Y
F035075	Metagenome / Metatranscriptome	173	Y
F045803	Metagenome	152	Y
F052659	Metagenome / Metatranscriptome	142	N
F063069	Metagenome	130	Y
F082562	Metagenome	113	N
F089570	Metagenome	109	N

Family

Category

Number of Sequences

3D Structure?

F003122

Metagenome / Metatranscriptome

506

F004881

Metagenome / Metatranscriptome

420

F006423

Metagenome

373

F010197

Metagenome

307

F012125

Metagenome

283

F033215

Metagenome / Metatranscriptome

178

F035075

Metagenome / Metatranscriptome

173

F045803

Metagenome

152

F052659

Metagenome / Metatranscriptome

142

F063069

Metagenome

130

F082562

Metagenome

113

F089570

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
JGI12207J13218_1001034	Not Available	3880	Open in IMG/M
JGI12207J13218_1001406	All Organisms → cellular organisms → Bacteria	3207	Open in IMG/M
JGI12207J13218_1001928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2657	Open in IMG/M
JGI12207J13218_1002720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2097	Open in IMG/M
JGI12207J13218_1009709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	873	Open in IMG/M
JGI12207J13218_1012705	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	721	Open in IMG/M
JGI12207J13218_1013371	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	696	Open in IMG/M
JGI12207J13218_1014127	Not Available	669	Open in IMG/M
JGI12207J13218_1017823	Not Available	572	Open in IMG/M
JGI12207J13218_1018759	Not Available	554	Open in IMG/M
JGI12207J13218_1019759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
JGI12207J13218_1020409	Not Available	525	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12207J13218_1001034

Not Available

3880

Open in IMG/M

JGI12207J13218_1001406

All Organisms → cellular organisms → Bacteria

3207

Open in IMG/M

JGI12207J13218_1001928

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

2657

Open in IMG/M

JGI12207J13218_1002720

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

2097

Open in IMG/M

JGI12207J13218_1009709

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

873

Open in IMG/M

JGI12207J13218_1012705

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

721

Open in IMG/M

JGI12207J13218_1013371

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

696

Open in IMG/M

JGI12207J13218_1014127

Not Available

669

Open in IMG/M

JGI12207J13218_1017823

Not Available

572

Open in IMG/M

JGI12207J13218_1018759

Not Available

554

Open in IMG/M

JGI12207J13218_1019759

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

535

Open in IMG/M

JGI12207J13218_1020409

Not Available

525

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12207J13218_1001034	JGI12207J13218_10010345	F012125	MSDTRYSVMHPDGGKYSFFSAGKPKNLPRFYFLVLAGIFLIIFMFLWFD*
JGI12207J13218_1001406	JGI12207J13218_10014063	F052659	MLLSGNPGTETRSAVFIDGRLISSIPELNYQSIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKCVILWAEV*
JGI12207J13218_1001928	JGI12207J13218_10019283	F035075	LICFFNNAISNKYVNKIIKLRRLWGIQKNTEAVGKWDPKKEELEKKIRKNS
JGI12207J13218_1002720	JGI12207J13218_10027204	F063069	SXLILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL*
JGI12207J13218_1009709	JGI12207J13218_10097093	F010197	NLFLLPNTTHELKAFTIKHDLTQHVTNILSRKDGIFFF*
JGI12207J13218_1012705	JGI12207J13218_10127051	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDVLDRIK
JGI12207J13218_1013371	JGI12207J13218_10133711	F006423	KTFKQHLNEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*
JGI12207J13218_1014127	JGI12207J13218_10141271	F033215	PLANVAPIGRLRVPPVEERVPAVALIPPLRDKSAAPVTIFSPVLSRVTGCATLRLDILSSSVKAKLAKSSVPTDREALSSIVEFAANRRVVELSGSTPLKSCTPSTSRMPPESVSALAFVVNVVFFVFSVAPVSDKAFCSTNVVSGIEILELKYWYRMEHWLRKRG*
JGI12207J13218_1017823	JGI12207J13218_10178232	F004881	MSYTFFEPSGKPYQECTNPNDPEDKSLCVLVQDGSNFDGAIVRYTTFKLLEQELTGGEIACRYEYEIEVPPHAIKHKITDKEGKEFEXKXGKWVIEILQKQMDKHAAKSRSTDTEKSNT*
JGI12207J13218_1018759	JGI12207J13218_10187591	F089570	NERPSLDLNEKQKTIVDNALSSCSDVNFDDLLNTRKEKLGINEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIF
JGI12207J13218_1019759	JGI12207J13218_10197592	F045803	MLKLFRISILLLFFSLIIPNLXFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLE
JGI12207J13218_1020409	JGI12207J13218_10204091	F003122	MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYMTYTAIQGYPKFETPKRGLYLKHYIDEPNWIYIWVIDKEQIPISYKIVYSREVHNALEGVKGKSEEGKFMVLGGEETEQAGMQGEEDGEHAGGHTIGGDISFYEWDYESS

Scaffold ID

Protein ID

Family

Sequence

JGI12207J13218_1001034

JGI12207J13218_10010345

F012125

MSDTRYSVMHPDGGKYSFFSAGKPKNLPRFYFLVLAGIFLIIFMFLWFD*

JGI12207J13218_1001406

JGI12207J13218_10014063

F052659

MLLSGNPGTETRSAVFIDGRLISSIPELNYQSIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKCVILWAEV*

JGI12207J13218_1001928

JGI12207J13218_10019283

F035075

LICFFNNAISNKYVNKIIKLRRLWGIQKNTEAVGKWDPKKEELEKKIRKNS

JGI12207J13218_1002720

JGI12207J13218_10027204

F063069

SXLILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL*

JGI12207J13218_1009709

JGI12207J13218_10097093

F010197

NLFLLPNTTHELKAFTIKHDLTQHVTNILSRKDGIFFF*

JGI12207J13218_1012705

JGI12207J13218_10127051

F082562

MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDVLDRIK

JGI12207J13218_1013371

JGI12207J13218_10133711

F006423

KTFKQHLNEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*

JGI12207J13218_1014127

JGI12207J13218_10141271

F033215

PLANVAPIGRLRVPPVEERVPAVALIPPLRDKSAAPVTIFSPVLSRVTGCATLRLDILSSSVKAKLAKSSVPTDREALSSIVEFAANRRVVELSGSTPLKSCTPSTSRMPPESVSALAFVVNVVFFVFSVAPVSDKAFCSTNVVSGIEILELKYWYRMEHWLRKRG*

JGI12207J13218_1017823

JGI12207J13218_10178232

F004881

MSYTFFEPSGKPYQECTNPNDPEDKSLCVLVQDGSNFDGAIVRYTTFKLLEQELTGGEIACRYEYEIEVPPHAIKHKITDKEGKEFEXKXGKWVIEILQKQMDKHAAKSRSTDTEKSNT*

JGI12207J13218_1018759

JGI12207J13218_10187591

F089570

NERPSLDLNEKQKTIVDNALSSCSDVNFDDLLNTRKEKLGINEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIF

JGI12207J13218_1019759

JGI12207J13218_10197592

F045803

MLKLFRISILLLFFSLIIPNLXFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLE

JGI12207J13218_1020409

JGI12207J13218_10204091

F003122

MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYMTYTAIQGYPKFETPKRGLYLKHYIDEPNWIYIWVIDKEQIPISYKIVYSREVHNALEGVKGKSEEGKFMVLGGEETEQAGMQGEEDGEHAGGHTIGGDISFYEWDYESS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001068: Marine microbial communities from the Deep Atlantic Ocean - MP0372

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences