NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300001058

3300001058: Marine microbial communities from the Deep Indian Ocean - MP0901



Overview

Basic Information
IMG/M Taxon OID3300001058 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054761 | Ga0000796
Sample NameMarine microbial communities from the Deep Indian Ocean - MP0901
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41948386
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → cellular organisms → Archaea2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationEast of Durban, South Africa, South Indian Ocean
CoordinatesLat. (o)-33.55Long. (o)39.89Alt. (m)N/ADepth (m)4002.12
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006552Metagenome370Y
F008912Metagenome / Metatranscriptome326Y
F012125Metagenome283Y
F089571Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12020J13220_1000670All Organisms → cellular organisms → Bacteria4846Open in IMG/M
JGI12020J13220_1002794All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2118Open in IMG/M
JGI12020J13220_1004516All Organisms → cellular organisms → Archaea1436Open in IMG/M
JGI12020J13220_1016138All Organisms → cellular organisms → Archaea512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12020J13220_1000670JGI12020J13220_10006701F008912MKNLVVTLGITGCGKSRWLKDKSPVIETDDLRIELLDDISDSTTQEGLIFGTAAKKISKLFDTHDTVYFGATLVDSKYRIPFLQSIQDVCKHKLVIDVVIFPGIPELSKERIARDLKSGVQRADSIKFIDEQYEQYLHTMSIFNKEKNFYRSIKRSAE*
JGI12020J13220_1002794JGI12020J13220_10027942F089571MIKKERKMYQNIIVLMIPILFLIAPAKSQHVKQKYATTEMDEKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIHEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN*
JGI12020J13220_1004516JGI12020J13220_10045164F012125MSDTRYSVMHPDGGKXSFFSAGKPKNLPRFYFLVLAGIFLXIFMFLWFD*
JGI12020J13220_1016138JGI12020J13220_10161382F006552PNVEIPLLISPVLKIKSSRINPAANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPIRLRIISRKNSNYADSVTVLIKV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.