NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000935

3300000935: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40



Overview

Basic Information
IMG/M Taxon OID3300000935 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075432 | Gp0054648 | Ga0001963
Sample NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22162570
Sequencing Scaffolds28
Novel Protein Genes30
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria4
Not Available12
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria5
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → Nostoc punctiforme1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001962Metagenome / Metatranscriptome611Y
F005718Metagenome / Metatranscriptome392Y
F010450Metagenome / Metatranscriptome303Y
F013030Metagenome / Metatranscriptome275Y
F015418Metagenome / Metatranscriptome255Y
F018438Metagenome / Metatranscriptome235Y
F019874Metagenome / Metatranscriptome227Y
F019958Metagenome / Metatranscriptome226Y
F020122Metagenome225Y
F026658Metagenome / Metatranscriptome197Y
F027605Metagenome / Metatranscriptome194Y
F031318Metagenome182Y
F031584Metagenome / Metatranscriptome182Y
F037358Metagenome / Metatranscriptome168Y
F039255Metagenome / Metatranscriptome164Y
F045461Metagenome152N
F047205Metagenome / Metatranscriptome150Y
F048473Metagenome148N
F063196Metagenome / Metatranscriptome130Y
F064047Metagenome / Metatranscriptome129Y
F074315Metagenome119N
F079486Metagenome / Metatranscriptome115Y
F081642Metagenome / Metatranscriptome114Y
F084774Metagenome / Metatranscriptome112N
F091533Metagenome107N
F098285Metagenome104Y
F100676Metagenome / Metatranscriptome102Y
F104209Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12407J12866_100614All Organisms → cellular organisms → Bacteria → Proteobacteria1680Open in IMG/M
JGI12407J12866_101186All Organisms → cellular organisms → Bacteria1324Open in IMG/M
JGI12407J12866_101646Not Available1153Open in IMG/M
JGI12407J12866_101888Not Available1075Open in IMG/M
JGI12407J12866_102603All Organisms → cellular organisms → Bacteria920Open in IMG/M
JGI12407J12866_102789Not Available891Open in IMG/M
JGI12407J12866_102867All Organisms → cellular organisms → Bacteria879Open in IMG/M
JGI12407J12866_103210All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium833Open in IMG/M
JGI12407J12866_103648All Organisms → cellular organisms → Bacteria → Acidobacteria783Open in IMG/M
JGI12407J12866_104010Not Available745Open in IMG/M
JGI12407J12866_104342All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha715Open in IMG/M
JGI12407J12866_104688Not Available689Open in IMG/M
JGI12407J12866_104703Not Available688Open in IMG/M
JGI12407J12866_104734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium685Open in IMG/M
JGI12407J12866_105275Not Available648Open in IMG/M
JGI12407J12866_105484Not Available636Open in IMG/M
JGI12407J12866_106169Not Available601Open in IMG/M
JGI12407J12866_106176Not Available601Open in IMG/M
JGI12407J12866_106426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium590Open in IMG/M
JGI12407J12866_106781All Organisms → cellular organisms → Bacteria → Acidobacteria576Open in IMG/M
JGI12407J12866_107873Not Available537Open in IMG/M
JGI12407J12866_107903All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
JGI12407J12866_108405All Organisms → cellular organisms → Bacteria522Open in IMG/M
JGI12407J12866_108751All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
JGI12407J12866_108782Not Available511Open in IMG/M
JGI12407J12866_108784All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
JGI12407J12866_108986All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
JGI12407J12866_109076All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → Nostoc punctiforme504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12407J12866_100614JGI12407J12866_1006142F010450MNSVPFSRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVARGLGLGNPDGRLTDEIERRLFEHLNGDRGFRP*
JGI12407J12866_101186JGI12407J12866_1011862F104209WHSECGDAGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12407J12866_101646JGI12407J12866_1016462F005718MAKRKKRVATVNRKLGISINCRVQKPFLKDLDAYRKPLKLSRPAALVKLAAEHLAGLKEPAEKLWEGAVERMFPAASGVKGDDPR*
JGI12407J12866_101888JGI12407J12866_1018881F098285MKLRLIAAILVITAVPVCAQAQKPDAAKVTNADAQKVLKIISGDKAKTQTYCDILNLGVQIEEADQSKDAKKADELIQKIDELTKKLGPEYLALVDGLQDVDMESEDGQQIGLVLE
JGI12407J12866_102603JGI12407J12866_1026032F031584GHVWTAPWQELSDASAALVGCGHVSGLFVRHNGRWP*
JGI12407J12866_102789JGI12407J12866_1027891F047205KTHTGKDATAAYSPTKGHSVVIYTHKFKPEHFRKGAEIVTKQFPDAQAQSKTPQKRLNIFLRRPSTHEIVNVSFFDAGPGVHDWHESEGRLKTVERLQDMLEKPIDVQVFEVDHVVGIS*
JGI12407J12866_102867JGI12407J12866_1028671F074315MEITDFTEQWSNMQKMFLESSEMSASFRESARRFWENQGKLLDNMQA
JGI12407J12866_103210JGI12407J12866_1032103F001962MILKSENYNFHRLDLTRQNGFIVTVYDEHGLRLATTEPCPTPALAFAEGRKIVDHRVEGPKKRIG*
JGI12407J12866_103648JGI12407J12866_1036481F039255NAQGWYLLGTCMVADPSIYKTQGDKITVTPTPGTAEAFQKAIDLDPNGPIGAQAKQGLEQLNQLTGGIETKIGSSKKKKP*
JGI12407J12866_104010JGI12407J12866_1040101F084774MHREQFARSTSPSIGLFMFLFLCNAGVVQAQAPETPLLPMNVEFRYLPEYIEQSTFDDPRYARIEALLTEDTCDVILLDKTTNREAFYSISKPRVDSLAACGSDAYITPIGFTASRTKDLSSTFFIRFQDHFGNEISWNFVVGRIVPHASPEVIYRTDNSGITFLYAPRRAPTADGTVLRIAGREYLPGSARSDTLVAFYATDMTLGQILPGTDLWTVEQSPTD
JGI12407J12866_104342JGI12407J12866_1043422F018438MGIDDKSSHPELCLEVAGGVTRTIVGLFREPDAGNPPVRFDEREQETELCQTGLRRRCKNFVNSHRETNATAPVLDSTQN
JGI12407J12866_104688JGI12407J12866_1046882F064047MTLMKSPGAGLLALAFGVVLSLFLSVGAFDASYAQPAPGAAP
JGI12407J12866_104703JGI12407J12866_1047031F045461LFXAVFVIMLAAAIIVDLAALLQLSGLISGLPLNILEIGGILTALTIFPLLVMGMSISVDLNHRK*
JGI12407J12866_104734JGI12407J12866_1047341F079486VNADAIPASQLACLLYDAAEGICADVAAVMLIDRHGHFLHDPAFRRIIAAGSSITTGQPLAVIRWTAAIH
JGI12407J12866_105275JGI12407J12866_1052751F015418MSIVSRRTFSTGVLASALLPAHSAIGQPNDPASIAIIDTPHNAARVASKLAAQNVKVVVRFFARKPQPWLHEKVMASDGNMIDGVRE
JGI12407J12866_105484JGI12407J12866_1054843F045461MVVREPTARHREFSIRSMLCGAVFTIMLVAAVIVDLAALLQFSGLISGLPANILKTSILEIGGILTALTIFPLLAMGMSISMDQNRSEDT*
JGI12407J12866_105625JGI12407J12866_1056252F091533MTVRNSFRPIARVFRATAAPRCRDELLQKFHSSSAALVNSKAGCLKYRILESVDASVPEVVFESIRRDLDAVK
JGI12407J12866_106169JGI12407J12866_1061691F031318RTTTIATVTIVVLALLIVAKSRTVGLTEATGNPVQSTMSIYDLDVGHANMKNLPVQEIPLPQ*
JGI12407J12866_106176JGI12407J12866_1061761F048473VLSSHACRVEICQCVQPKELALGNRITAALIFLNAVGFLGCLILIATVSHQVPDVAIWIIRAVKYSLQMFIFGALLPVIVWSIAASEINRSSFRVRLVEDWARYFLLFASGALFFIAASRLPNSIISSSEHESELTTRHEGGFWICPFLGRCWPPGTPGLGTWEK*
JGI12407J12866_106208JGI12407J12866_1062081F026658QIYTPKGARLEANTILVEEERLLIGADPLGVYEFRRPDRVH*
JGI12407J12866_106426JGI12407J12866_1064261F019958PNALHQPAQYTRLLERAVATMLAPGDGVQGVVFTAFPESGTVAAKNPEQQTAVNKERAAGLAAWNAIAEKMTKVYPGRVMYFPVGGSILLHGRYSAWLPPEDSPHAPSSAWIRVRKLDNVHFCPEGAARYADALLTDMTAVFGLSPAAPDWSQGAWTSDPEFNDPPGACPDDHPPGP*
JGI12407J12866_106781JGI12407J12866_1067812F100676MKTTSYERIVFGASAVFYGAMALRWYDAQTWQTLAEIWKLPIGRIVGGCLMAAQIAGGIGIQFTRTTRLASIVLVIVYLSFSLACVPGI
JGI12407J12866_107873JGI12407J12866_1078731F074315METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQT
JGI12407J12866_107903JGI12407J12866_1079032F027605DYDDQAHAVSYNVDIVEGKVYRFHEMTITGMSLAGERQIRDAWTIKPGDVLDKVVFEQFLTTLESHRDNIFKGLPVHYDTVGHWLQTDPEKGTVDVLLDFK*
JGI12407J12866_108405JGI12407J12866_1084052F063196LANWFRIYAWFLLLVTALPAIARLARPRELAQIMLLRYENPTRRKRARIGGAVYLALAMLATPFLLRSPEHQKRWL
JGI12407J12866_108751JGI12407J12866_1087512F013030MSAQANSIASASVTPEPFVSADEAARFLCVKRRYLLELARRGIVGAYPLGTGRKRKLWVFRLSELADSVPRNELLAKKSPKPCTIGPGSPR*KDALCLISE
JGI12407J12866_108782JGI12407J12866_1087821F020122MTERREETLMLKRDPDAVRSEGYNVLFEGRHVGRIYKAVSHAPREAPWFWGLDFFEWQGSDGPQYGNVATLEAAKQAFRAAWDRRPIHKERDR*TWGGLAVSHF*
JGI12407J12866_108784JGI12407J12866_1087842F081642PDTPERLFIVGQDFVFDFRPPNNPRRISGKKKLGMAFNAVSPFPEGGALVVGPKGSIALIP*
JGI12407J12866_108986JGI12407J12866_1089861F037358RQKFLAALARQQQWNAGAALEFQSDLQMYEAILLKASQQRRRRKPFEAVNHPFVDRCAFLLDSSFLEDARVAASRALTDLEQLSGRLVDQVFLPAQRKS*
JGI12407J12866_109076JGI12407J12866_1090761F019874AGEEGVSETDSHGAVSLARKIFAPTESGDSFQKKYFDAIQNDPAVVMEHAELVRLFNNEPGDREAE*
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