Sample 3300000695

Overview

Basic Information
IMG/M Taxon OID	3300000695 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054381 \| Ga0001997
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	8332006
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007624	Metagenome / Metatranscriptome	348	N
F011271	Metagenome	292	Y
F020122	Metagenome	225	Y
F025455	Metagenome / Metatranscriptome	201	Y
F031584	Metagenome / Metatranscriptome	182	Y
F033176	Metagenome / Metatranscriptome	178	Y
F035932	Metagenome	171	Y
F043306	Metagenome	156	Y
F044610	Metagenome / Metatranscriptome	154	Y
F045461	Metagenome	152	N
F060395	Metagenome / Metatranscriptome	133	Y
F075781	Metagenome / Metatranscriptome	118	Y
F078037	Metagenome	116	N
F079486	Metagenome / Metatranscriptome	115	Y
F091102	Metagenome	107	N

Family

Category

Number of Sequences

3D Structure?

F007624

Metagenome / Metatranscriptome

348

F011271

Metagenome

292

F020122

Metagenome

225

F025455

Metagenome / Metatranscriptome

201

F031584

Metagenome / Metatranscriptome

182

F033176

Metagenome / Metatranscriptome

178

F035932

Metagenome

171

F043306

Metagenome

156

F044610

Metagenome / Metatranscriptome

154

F045461

Metagenome

152

F060395

Metagenome / Metatranscriptome

133

F075781

Metagenome / Metatranscriptome

118

F078037

Metagenome

116

F079486

Metagenome / Metatranscriptome

115

F091102

Metagenome

107

Scaffold	Taxonomy	Length	IMG/M Link
JGI12539J11930_100044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2594	Open in IMG/M
JGI12539J11930_100122	All Organisms → cellular organisms → Bacteria → Proteobacteria	1934	Open in IMG/M
JGI12539J11930_100397	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
JGI12539J11930_100449	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
JGI12539J11930_100758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1103	Open in IMG/M
JGI12539J11930_101306	Not Available	849	Open in IMG/M
JGI12539J11930_101647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	747	Open in IMG/M
JGI12539J11930_101765	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
JGI12539J11930_101818	Not Available	717	Open in IMG/M
JGI12539J11930_102200	Not Available	651	Open in IMG/M
JGI12539J11930_102713	Not Available	588	Open in IMG/M
JGI12539J11930_102753	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
JGI12539J11930_103106	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
JGI12539J11930_103176	Not Available	538	Open in IMG/M
JGI12539J11930_103291	Not Available	529	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12539J11930_100044

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2594

Open in IMG/M

JGI12539J11930_100122

All Organisms → cellular organisms → Bacteria → Proteobacteria

1934

Open in IMG/M

JGI12539J11930_100397

All Organisms → cellular organisms → Bacteria

1409

Open in IMG/M

JGI12539J11930_100449

All Organisms → cellular organisms → Bacteria

1350

Open in IMG/M

JGI12539J11930_100758

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

1103

Open in IMG/M

JGI12539J11930_101306

Not Available

849

Open in IMG/M

JGI12539J11930_101647

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8

747

Open in IMG/M

JGI12539J11930_101765

All Organisms → cellular organisms → Bacteria → Proteobacteria

726

Open in IMG/M

JGI12539J11930_101818

Not Available

717

Open in IMG/M

JGI12539J11930_102200

Not Available

651

Open in IMG/M

JGI12539J11930_102713

Not Available

588

Open in IMG/M

JGI12539J11930_102753

All Organisms → cellular organisms → Bacteria

583

Open in IMG/M

JGI12539J11930_103106

All Organisms → cellular organisms → Bacteria → Proteobacteria

545

Open in IMG/M

JGI12539J11930_103176

Not Available

538

Open in IMG/M

JGI12539J11930_103291

Not Available

529

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12539J11930_100044	JGI12539J11930_1000441	F007624	GRCRLLFEPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*
JGI12539J11930_100122	JGI12539J11930_1001221	F045461	MLCGAVFIIMLVAAVIVDLAALLQFSGLISGLPANILKTSMLEIGGILTALTIFPLLAMGMSISMDQNRSEDT*
JGI12539J11930_100397	JGI12539J11930_1003972	F031584	ALEFGPLMSALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12539J11930_100449	JGI12539J11930_1004492	F091102	MKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*
JGI12539J11930_100758	JGI12539J11930_1007582	F079486	VNADAIPASQLACLLYDAAEGICADVAAVMLIDRHGHFLHDPAFRRIIAAGSSITTGQPLAVIRWTAAIHALEAGQLPCCSSEKAILRLP
JGI12539J11930_101306	JGI12539J11930_1013061	F078037	MDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGL
JGI12539J11930_101647	JGI12539J11930_1016473	F075781	EERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12539J11930_101765	JGI12539J11930_1017651	F035932	VGLPGAQQLVVVEKDLSGRVTTKEIMPVLFSVLEESDQPAFRAS*
JGI12539J11930_101818	JGI12539J11930_1018181	F025455	LHSSGHRGKGGGTRAQSSGVNWGTSGFPPQADFLGCSSLRRESISGGEGFRVSDEAVVSDDPSGQHNPMASQGPLDGRVGVAGSRAILNRKALERVIPSGITYSWERELRWRIRQSHGAYVDGT*
JGI12539J11930_102200	JGI12539J11930_1022002	F011271	CVFQGASGREPKYEICAPVKAVIGTSAVTAIVFLPGAKXLAAGTKHMRRNRTRSVGRRSRIDFQLEPKERQALKLAEIREALVAAGYNTTAKQAAVLGIGRSTAWWLLNHNKRAGPSAKVIKRILLSPQIPKRVRRKVEQYVEEKVRGVYGHSEQRTQWFSEQFQRSPNS*
JGI12539J11930_102713	JGI12539J11930_1027132	F020122	MLEETLILKRNPDAEYSESYNVLFEGRYVGRIYKAVSHAPREAPCFWGLEFHEWQGSDGPQYGNVATLEAAKQAFRAAWDRGPKASGKS*
JGI12539J11930_102753	JGI12539J11930_1027532	F060395	MIAHNPLHGSGQAALPHPALALGNDAHAAQRIGMTDGRQRQPASDEAPHXVPKDAAILAAPRQRAVPEASHLEPEKRQRRLVPGHSVIVDVSTHHRLQPFTQFRNGRMQASLKLGFHLVQLRLQPFADRLPQYRIHSVAPLLYADVRKAEKVERLRFPFSTSLPVQDRERS
JGI12539J11930_103106	JGI12539J11930_1031063	F043306	MTNSQSIAVTTVFSIGLAFVPAAWADPASDACAALVDSRGTLYS
JGI12539J11930_103176	JGI12539J11930_1031762	F033176	MDPKLTILFLLIGGIVALSHLNEENMQRVRRQLLARRWRNFVPGQRKS*
JGI12539J11930_103291	JGI12539J11930_1032911	F044610	VLKKSKTPLKTADIYDNLVAQGYKFTFNEPKKVLGIRLYKMLGVQALGGGLFKAK*

Scaffold ID

Protein ID

Family

Sequence

JGI12539J11930_100044

JGI12539J11930_1000441

F007624

GRCRLLFEPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*

JGI12539J11930_100122

JGI12539J11930_1001221

F045461

MLCGAVFIIMLVAAVIVDLAALLQFSGLISGLPANILKTSMLEIGGILTALTIFPLLAMGMSISMDQNRSEDT*

JGI12539J11930_100397

JGI12539J11930_1003972

F031584

ALEFGPLMSALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*

JGI12539J11930_100449

JGI12539J11930_1004492

F091102

MKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*

JGI12539J11930_100758

JGI12539J11930_1007582

F079486

VNADAIPASQLACLLYDAAEGICADVAAVMLIDRHGHFLHDPAFRRIIAAGSSITTGQPLAVIRWTAAIHALEAGQLPCCSSEKAILRLP

JGI12539J11930_101306

JGI12539J11930_1013061

F078037

MDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGL

JGI12539J11930_101647

JGI12539J11930_1016473

F075781

EERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*

JGI12539J11930_101765

JGI12539J11930_1017651

F035932

VGLPGAQQLVVVEKDLSGRVTTKEIMPVLFSVLEESDQPAFRAS*

JGI12539J11930_101818

JGI12539J11930_1018181

F025455

LHSSGHRGKGGGTRAQSSGVNWGTSGFPPQADFLGCSSLRRESISGGEGFRVSDEAVVSDDPSGQHNPMASQGPLDGRVGVAGSRAILNRKALERVIPSGITYSWERELRWRIRQSHGAYVDGT*

JGI12539J11930_102200

JGI12539J11930_1022002

F011271

CVFQGASGREPKYEICAPVKAVIGTSAVTAIVFLPGAKXLAAGTKHMRRNRTRSVGRRSRIDFQLEPKERQALKLAEIREALVAAGYNTTAKQAAVLGIGRSTAWWLLNHNKRAGPSAKVIKRILLSPQIPKRVRRKVEQYVEEKVRGVYGHSEQRTQWFSEQFQRSPNS*

JGI12539J11930_102713

JGI12539J11930_1027132

F020122

MLEETLILKRNPDAEYSESYNVLFEGRYVGRIYKAVSHAPREAPCFWGLEFHEWQGSDGPQYGNVATLEAAKQAFRAAWDRGPKASGKS*

JGI12539J11930_102753

JGI12539J11930_1027532

F060395

MIAHNPLHGSGQAALPHPALALGNDAHAAQRIGMTDGRQRQPASDEAPHXVPKDAAILAAPRQRAVPEASHLEPEKRQRRLVPGHSVIVDVSTHHRLQPFTQFRNGRMQASLKLGFHLVQLRLQPFADRLPQYRIHSVAPLLYADVRKAEKVERLRFPFSTSLPVQDRERS

JGI12539J11930_103106

JGI12539J11930_1031063

F043306

MTNSQSIAVTTVFSIGLAFVPAAWADPASDACAALVDSRGTLYS

JGI12539J11930_103176

JGI12539J11930_1031762

F033176

MDPKLTILFLLIGGIVALSHLNEENMQRVRRQLLARRWRNFVPGQRKS*

JGI12539J11930_103291

JGI12539J11930_1032911

F044610

VLKKSKTPLKTADIYDNLVAQGYKFTFNEPKKVLGIRLYKMLGVQALGGGLFKAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000695: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences