NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000691

3300000691: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53



Overview

Basic Information
IMG/M Taxon OID3300000691 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075432 | Gp0054554 | Ga0001976
Sample NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6771981
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
Not Available5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001962Metagenome / Metatranscriptome611Y
F007624Metagenome / Metatranscriptome348N
F012657Metagenome278Y
F015573Metagenome253Y
F029309Metagenome188Y
F045461Metagenome152N
F050785Metagenome / Metatranscriptome145Y
F062062Metagenome / Metatranscriptome131Y
F091102Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12369J11874_100025All Organisms → cellular organisms → Bacteria → Acidobacteria2337Open in IMG/M
JGI12369J11874_100090All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1583Open in IMG/M
JGI12369J11874_100133All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1426Open in IMG/M
JGI12369J11874_100349Not Available1036Open in IMG/M
JGI12369J11874_100810Not Available702Open in IMG/M
JGI12369J11874_100900Not Available676Open in IMG/M
JGI12369J11874_101001Not Available654Open in IMG/M
JGI12369J11874_101622Not Available544Open in IMG/M
JGI12369J11874_102049All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12369J11874_100025JGI12369J11874_1000251F062062MLADTSSPRGSDATLASVGTLSEGFERFVASPPHLVGYV
JGI12369J11874_100090JGI12369J11874_1000901F007624GAVSGRCRLLFEPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*
JGI12369J11874_100133JGI12369J11874_1001334F015573VAETESPPQDELHNPAVYLERIAREIKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKEXDNEAGKSNEGRSGS*
JGI12369J11874_100349JGI12369J11874_1003491F045461MLFSAVFTIMLVAAAIVDLAALLQFSGLISGLPANILKTSILEIGGILTALTIFPLLAMGMSISIDQN
JGI12369J11874_100810JGI12369J11874_1008101F012657VNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLE
JGI12369J11874_100900JGI12369J11874_1009001F050785MLILVRRSQICNSRIVSALPSCGRLPATVPDLTNRARQLVFLTPINSQLNDFLNEIHQIARLEPSIVDRIDEDLDLHAKKKKLQRLIDAQFLAGQTPDLPKLQLQLRELKLDNIDLEIGRPRTEAYIVYLFLMLRGLIGGCKDQHGRLFLEESITLKLWLNHLGLELPPASTLSENLNAVSNQTRALIQQAQLRYILQEDLDDFQKCF
JGI12369J11874_101001JGI12369J11874_1010011F091102STEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*
JGI12369J11874_101622JGI12369J11874_1016221F029309MIHKVRINKKYPFKQMSPGETFKLNELDVRGAQKLAYYYRSLCKRPIQVVVT
JGI12369J11874_102049JGI12369J11874_1020492F001962HRLDLTRQAGFIVTIYDEQGLRLASTPPLPTPSQAFEEARKIVDNKIEGPKKLKIPPSIMPP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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