| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000684 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0075432 | Gp0054838 | Ga0001954 |
| Sample Name | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5798912 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 164 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → tropical forest → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Luquillo Experimental Forest Soil, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.0 | Long. (o) | -65.0 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007624 | Metagenome / Metatranscriptome | 348 | N |
| F011109 | Metagenome / Metatranscriptome | 295 | Y |
| F012539 | Metagenome / Metatranscriptome | 280 | Y |
| F019273 | Metagenome | 230 | Y |
| F034501 | Metagenome | 174 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12337J11877_100166 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1229 | Open in IMG/M |
| JGI12337J11877_100999 | Not Available | 570 | Open in IMG/M |
| JGI12337J11877_101110 | Not Available | 547 | Open in IMG/M |
| JGI12337J11877_101188 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 164 | 535 | Open in IMG/M |
| JGI12337J11877_101359 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12337J11877_100166 | JGI12337J11877_1001662 | F007624 | EPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF* |
| JGI12337J11877_100999 | JGI12337J11877_1009991 | F034501 | MHDTHKQDYLAQAERHIAKAQERIARQKGIIDKLVQAGQETDCATSMLHALETCLHAFEQ |
| JGI12337J11877_101110 | JGI12337J11877_1011101 | F019273 | MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYXRTRCKRPIRIIIAKSDDGFHCHRID* |
| JGI12337J11877_101188 | JGI12337J11877_1011881 | F012539 | VGSEGSTKQKCGSMDKNRIEGASAGRAGNVPRSPYPSRVRSVDSATVHGRRLRLPQEICSVSLLRLRQPRGGLTAGQKSAEGIIGHGVGKASEALRNRKVESTDRPNRKRWLKARTRGEASRT* |
| JGI12337J11877_101359 | JGI12337J11877_1013591 | F011109 | VNSSSTAKTILFWISIVFLGVMLWKLVSTNGATARESTPSYSDFVVSVEQGDVKEVTMYLSPNSYELQGEYLKPANQKFRLIIPKENAPEL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |