| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000678 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0075432 | Gp0054562 | Ga0001969 |
| Sample Name | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5238197 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → tropical forest → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Luquillo Experimental Forest Soil, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.0 | Long. (o) | -65.0 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005152 | Metagenome / Metatranscriptome | 410 | Y |
| F005929 | Metagenome / Metatranscriptome | 386 | Y |
| F031318 | Metagenome | 182 | Y |
| F031584 | Metagenome / Metatranscriptome | 182 | Y |
| F069634 | Metagenome | 123 | Y |
| F097461 | Metagenome / Metatranscriptome | 104 | Y |
| F104209 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12377J11919_100015 | All Organisms → cellular organisms → Bacteria | 2220 | Open in IMG/M |
| JGI12377J11919_100102 | All Organisms → cellular organisms → Bacteria | 1377 | Open in IMG/M |
| JGI12377J11919_100387 | Not Available | 793 | Open in IMG/M |
| JGI12377J11919_100744 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 606 | Open in IMG/M |
| JGI12377J11919_101067 | Not Available | 533 | Open in IMG/M |
| JGI12377J11919_101287 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12377J11919_100015 | JGI12377J11919_1000152 | F104209 | NGHGGAGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR* |
| JGI12377J11919_100102 | JGI12377J11919_1001021 | F031584 | ALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM* |
| JGI12377J11919_100387 | JGI12377J11919_1003871 | F005929 | MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRNIVGDLRQRSVDVYLAAKTPEAESDSKKFREASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYRYF* |
| JGI12377J11919_100744 | JGI12377J11919_1007441 | F005152 | MKITLFVLVLLCTATAFGQAVYTIPSQPQITAVPEHPQHADIHEMAVEHPLVGGGANTYSYAQGERPLWEFGPVSQPTPLGDVARAFRKEKLAAKKAEHVLEKQGS* |
| JGI12377J11919_101067 | JGI12377J11919_1010671 | F069634 | KPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI* |
| JGI12377J11919_101113 | JGI12377J11919_1011131 | F097461 | VLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA* |
| JGI12377J11919_101287 | JGI12377J11919_1012872 | F031318 | MRTTTIATVAVVVLALLIVAKSRTVGLTEATGNPQQNTVSIYDLSVGHPNMKNLTVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |