x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy.
OK
Sample 3300000530
3300000530: Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China - PRO_U
Overview
| Basic Information |
| IMG/M Taxon OID | 3300000530 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0083745 | Gp0054997 | Ga0011597 |
| Sample Name | Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China - PRO_U |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Macrogen |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 5290185 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Acid Mine Drainage (Amd) Microbial Communities From Fan Kou Mine, Shaoguan City, Guangdong Province, China |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Acid Mine Drainage → Acid Mine Drainage (Amd) Microbial Communities From Fan Kou Mine, Shaoguan City, Guangdong Province, China |
| Location Information |
| Location | Fankou, Shaoguan City, China |
| Coordinates | Lat. (o) | 24.814784 | Long. (o) | 113.602638 | Alt. (m) | N/A | Depth (m) | 1 |
Location on Map |
|
|
| Zoom: |
Powered by OpenStreetMap © |
Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F034504 | Metagenome | 174 | Y |
| F036523 | Metagenome | 169 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| PROU1_101407 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. | 1644 | Open in IMG/M |
| PROU1_101631 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 30504 | Open in IMG/M |
| PROU1_102213 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 6974 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| PROU1_101407 | PROU1_1014073 | F036523 | MAYNYGSPITGTLTTTTAVVQFPNEPMPASIVLNSASGSRAIQFSFDNGTTFYPAVTPTYSETGQIVYVLNFPVTTIQFTGAVNDTYAIIS* |
| PROU1_101631 | PROU1_10163117 | F034504 | MKIDFYLKWTATAITILGAVFTSVNMYPMGPALLNLGALGWLIVAIRWREWSLITINGTLLLIYTVGLISKLI* |
| PROU1_102213 | PROU1_1022134 | F036523 | MAYNYGSPITGTLTATTAVVTFPNEPMPASIVLNSSAAGRAIQFSFDNGITFYPAVTPTYTETGQIVYVLNFPVTTIQFTGAVNDTYAIIS* |
